gsea_olink_run: gsea_olink_run

In vincent-van-hoef/Analysis5204: Analysis for NBIS support project #5204

gsea_olink_run

Description

Run GSEA analysis from the output of an Olink statistical test using the estimate as the ranking metric

Usage

gsea_olink_run(
  x,
  gs = gsea_sets,
  minGSSize = 2,
  contrastName = compname,
  save = TRUE,
  saveFolder
)

Arguments

x	output from an Olink statistical test
gs	Gene set collection, Default: gsea_sets
minGSSize	minimum gene set size to be considered, Default: 2
contrastName	Name of contrast for filename purposes
save	save results, logical, Default: TRUE
saveFolder	path to folder where results are to be save if save=TRUE

Details

DETAILS

Value

returns a cluterProfiler result object, suitable for further visualization

See Also

enframe write.xlsx

Examples

## Not run: 
if(interactive()){
 #EXAMPLE1
 }

## End(Not run)

vincent-van-hoef/Analysis5204 documentation built on June 24, 2022, 2:41 p.m.