Description Usage Arguments Examples
This function takes a matrix or dataframe as input and upon specifying the correct columns output the number of elements in the differently regulated groups. Optionally, the volcanoplot is also plotted. A log10 transformation of the p-value column can also be applied
1 |
x |
Dataframe of matrix to be plotted |
pCol |
Name of column contianing the p-values |
effCol |
Name of column containing the effect sizes |
minP |
p-value cutoff |
minEff |
Effect size cutoff |
log10 |
Logical indicating whether to log transform the p-values |
plot |
Logical indicating whether to plot or not |
1 | volcanoplot(x, pCol="pVal", effCol = "log2FC", minP = 0.05, minEff = 1, log10 = TRUE, plot = TRUE)
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