plot_genEffects_GE: plot of genome wide QTL allelic effect significance

In vincentgarin/mppGxE: MPP GxE QTL analysis

plot of genome wide QTL allelic effect significance

Description

Plot of the genome wide significance of the QTL allelic effects in multiple environments.

Usage

plot_genEffects_GE(
  mppData,
  nEnv,
  EnvNames,
  Qprof,
  Q.eff,
  QTL = NULL,
  ref_par = NULL,
  main = "QTL genetic effects plot",
  text.size = 18
)

Arguments

mppData	An object of class mppData.
nEnv	Numeric number of environment or trait.
EnvNames	character expression indicating the environment or trait labels.
Qprof	object obtained with function mppGE_SIM, mppGE_CIM, mppGE_oneS_SIM or mppGE_oneS_CIM using argument plot.gen.effect = TRUE.
Q.eff	on of "cr", "par", "anc" or "biall".
QTL	Optional argument. Object of class QTLlist representing a list of selected position obtained with the function QTL_select or a vector of character marker or in between marker positions names. These positions will be plotted on the graph. Default = NULL.
main	Title of the graph. Default = "QTL genetic effects plot".
text.size	Numeric value specifying the size of graph axis text elements. Default = 18.

Author(s)

Vincent Garin

See Also

mppGE_CIM, mppGE_SIM

Examples

# Come later

vincentgarin/mppGxE documentation built on June 25, 2022, 2:45 p.m.