PermutResult2D: 2D bin plot of the features of top N domain-protein pairs as...

In vitkl/NetFeaturePval: Find Features Enriched among Nodes that Interact with Each Single Node

Description

2D bin plot of the features of top N domain-protein pairs as identified by permutationPval

Usage

PermutResult2D(res, N, id.cols = c("IDs_interactor_viral",
  "IDs_domain_human"), value.cols = c("domain_count",
  "IDs_interactor_viral_degree", "domain_count_per_IDs_interactor_viral",
  "p.value"), rank_by = "p.value", filter = NULL)

Arguments

res	permutationPval output of (class XYZinteration_XZEmpiricalPval)
N	the number of top pairs to look at
id.cols	character, columns that define domain-protein pairs (domain id and protein id)
value.cols	which values to plot
top_by	column name by which to select top N pair

Value

ggplot

Author(s)

Vitalii Kleshchevnikov

vitkl/NetFeaturePval documentation built on May 19, 2019, 9:39 p.m.