API for vitkl/ParetoTI
R toolbox for Archetypal Analysis and Pareto Task Inference on single cell data
| Global functions | |
|---|---|
| .arc_data_table | Source code |
| .archLines | Man page Source code |
| .find_decreasing_1 | Source code |
| .onLoad | Source code |
| .py_fbpca_installed | Source code |
| .py_geosketch_installed | Source code |
| .py_pcha_installed | Source code |
| .type_lab | Source code |
| align_arc | Man page Source code |
| annotate_archetypes | Man page Source code |
| arch_dist | Man page Source code |
| arch_to_tsne | Man page Source code |
| arch_to_umap | Man page Source code |
| average_pch_fits | Man page Source code |
| bin_cells_by_arch | Man page |
| build_logit_vert | Man page Source code |
| c.k_pch_fit | Man page |
| compute_gene_deviance | Man page Source code |
| filter_go_annot | Man page Source code |
| find_decreasing | Man page Source code |
| find_decreasing_wilcox | Man page |
| find_gam_deriv | Man page Source code |
| find_set_activity_AUCell | Man page Source code |
| find_set_activity_pseudoinv | Man page |
| find_tradeoff_wilcox | Man page |
| fit_arc_gam_1 | Man page Source code |
| fit_convhulln | Man page |
| fit_logistic_model | Man page Source code |
| fit_pch | Man page Source code |
| fit_pch_bootstrap | Man page Source code |
| fit_pch_resample | Man page Source code |
| gen_permut | Man page Source code |
| generate_arc | Man page Source code |
| generate_data | Man page Source code |
| geo_sketch | Man page Source code |
| get_feature_weights | Man page |
| get_top_decreasing | Man page Source code |
| hello | Man page |
| install_py_pcha | Man page Source code |
| k_fit_pch | Man page Source code |
| load_go_ontology | Man page Source code |
| make_features | Man page Source code |
| map_gene_annot | Man page Source code |
| map_go_annot | Man page Source code |
| map_gwas_annot | Man page Source code |
| map_promoter_tf | Man page |
| measure_activity | Man page Source code |
| merge_arch_dist | Man page |
| pch_fit | Man page |
| plot.gam_deriv | Man page |
| plot.r_pch_fit | Man page |
| plot_arc | Man page Source code |
| plot_arc_var | Man page Source code |
| plot_arch_struct | Man page Source code |
| plot_confusion | Man page Source code |
| plot_confusion_vert | Man page |
| plot_dim_var | Man page |
| plot_gam | Man page Source code |
| poisson_regression | Man page Source code |
| predict_logistic_prob | Man page Source code |
| predict_vert | Man page |
| print.b_pch_fit | Man page |
| print.k_pch_fit | Man page |
| print.pch_fit | Man page |
| print.r_pch_fit | Man page |
| project_from_pc | Man page Source code |
| project_to_pcs | Man page Source code |
| rand_var | Man page Source code |
| randomise_fit_pch | Man page Source code |
| randomise_fit_pch1 | Man page |
| select_conda | Source code |
| split_train_val | Man page |
| subset.k_pch_fit | Man page |
| summary.gam_deriv | Man page Source code |
