Files in vitkl/ParetoTI

R toolbox for Archetypal Analysis and Pareto Task Inference on single cell data

.DS_Store

.Rbuildignore

.gitignore

DESCRIPTION

LICENSE

NAMESPACE

ParetoTI.Rproj

R/.DS_Store

R/align_arc.R R/annotate_archetypes.R R/arc_data_table.R R/arch_dist.R R/find_decreasing.R R/find_set_activity.R R/fit_pch.R R/gam_deriv.R R/generate_arc.R R/geo_sketch.R R/logistic_model.R R/logistic_reg_vert.R R/map_gene_annot.R R/map_go_annot.R R/plot_arc.R R/plot_arc_var.R R/plot_arch_struct.R R/plot_gam.R R/poisson_regression.R R/project.R R/rand_var.R R/utility_functions.R R/zzz.R README.md

docs/LICENSE-text.html

docs/articles/Comparison_to_kmeans.html

docs/articles/Comparison_to_kmeans_files/figure-html/arc_vs_kmeans-1.png

docs/articles/Comparison_to_kmeans_files/figure-html/sim-1.png

docs/articles/Comparison_to_kmeans_files/figure-html/unnamed-chunk-1-1.png

docs/articles/Comparison_to_kmeans_files/figure-html/unnamed-chunk-2-1.png

docs/articles/Comparison_to_kmeans_files/figure-html/unnamed-chunk-2-2.png

docs/articles/Hepatocyte_example.html

docs/articles/Hepatocyte_example_files/crosstalk-1.0.0/css/crosstalk.css

docs/articles/Hepatocyte_example_files/crosstalk-1.0.0/js/crosstalk.js

docs/articles/Hepatocyte_example_files/crosstalk-1.0.0/js/crosstalk.js.map

docs/articles/Hepatocyte_example_files/crosstalk-1.0.0/js/crosstalk.min.js

docs/articles/Hepatocyte_example_files/crosstalk-1.0.0/js/crosstalk.min.js.map

docs/articles/Hepatocyte_example_files/figure-html/k_poly-1.png

docs/articles/Hepatocyte_example_files/figure-html/k_poly-2.png

docs/articles/Hepatocyte_example_files/figure-html/k_poly-3.png

docs/articles/Hepatocyte_example_files/figure-html/k_poly-4.png

docs/articles/Hepatocyte_example_files/figure-html/unnamed-chunk-1-1.png

docs/articles/Hepatocyte_example_files/figure-html/unnamed-chunk-3-1.png

docs/articles/Hepatocyte_example_files/htmlwidgets-1.3/htmlwidgets.js

docs/articles/Hepatocyte_example_files/jquery-1.11.3/jquery-AUTHORS.txt

docs/articles/Hepatocyte_example_files/jquery-1.11.3/jquery.js

docs/articles/Hepatocyte_example_files/jquery-1.11.3/jquery.min.js

docs/articles/Hepatocyte_example_files/jquery-1.11.3/jquery.min.map

docs/articles/Hepatocyte_example_files/plotly-binding-4.8.0/plotly.js

docs/articles/Hepatocyte_example_files/plotly-binding-4.9.0/plotly.js

docs/articles/Hepatocyte_example_files/plotly-htmlwidgets-css-1.39.2/plotly-htmlwidgets.css

docs/articles/Hepatocyte_example_files/plotly-htmlwidgets-css-1.46.1/plotly-htmlwidgets.css

docs/articles/Hepatocyte_example_files/plotly-main-1.39.2/plotly-latest.min.js

docs/articles/Hepatocyte_example_files/plotly-main-1.46.1/plotly-latest.min.js

docs/articles/Hepatocyte_example_files/typedarray-0.1/typedarray.min.js

docs/articles/index.html

docs/authors.html

docs/docsearch.css

docs/docsearch.js

docs/index.html

docs/link.svg

docs/pkgdown.css

docs/pkgdown.js

docs/pkgdown.yml

docs/reference/align_arc.html

docs/reference/annotate_archetypes-1.png

docs/reference/annotate_archetypes.html

docs/reference/arch_dist.html

docs/reference/dot-archLines.html

docs/reference/find_decreasing.html

docs/reference/find_gam_deriv.html

docs/reference/find_set_activity_AUCell.html

docs/reference/fit_logistic_model.html

docs/reference/fit_pch.html

docs/reference/generate_arc.html

docs/reference/geo_sketch.html

docs/reference/hello.html

docs/reference/index.html

docs/reference/install_py_pcha.html

docs/reference/map_gene_annot.html

docs/reference/measure_activity.html

docs/reference/plot_arc-1.png

docs/reference/plot_arc-2.png

docs/reference/plot_arc-3.png

docs/reference/plot_arc-4.png

docs/reference/plot_arc.html

docs/reference/plot_arc_var.html

docs/reference/plot_arch_struct.html

docs/reference/plot_gam.html

docs/reference/poisson_regression.html

docs/reference/predict_vert.html

docs/reference/project.html

docs/reference/project_to_pcs-1.png

docs/reference/project_to_pcs-2.png

docs/reference/project_to_pcs-3.png

docs/reference/project_to_pcs.html

docs/reference/rand_var.html

man/align_arc.Rd man/annotate_archetypes.Rd man/arch_dist.Rd man/dot-archLines.Rd man/find_decreasing.Rd man/find_gam_deriv.Rd man/find_set_activity_AUCell.Rd man/fit_logistic_model.Rd man/fit_pch.Rd man/generate_arc.Rd man/geo_sketch.Rd man/hello.Rd man/install_py_pcha.Rd man/map_gene_annot.Rd man/measure_activity.Rd man/plot_arc.Rd man/plot_arc_var.Rd man/plot_arch_struct.Rd man/plot_gam.Rd man/poisson_regression.Rd man/predict_vert.Rd man/project_to_pcs.Rd man/rand_var.Rd tests.R vignettes/Comparison_to_kmeans.Rmd vignettes/Hepatocyte_example.Rmd

vignettes/introduction.Rmd.zip

vignettes/processed_data/.DS_Store

vignettes/processed_data/GSE84498/GSE84498_experimental_design.txt.gz

vignettes/processed_data/GSE84498/GSE84498_umitab.txt.gz

vitkl/ParetoTI documentation built on Feb. 11, 2020, 1:36 a.m.