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DESCRIPTION
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R/.DS_Store
R/align_arc.R
R/annotate_archetypes.R
R/arc_data_table.R
R/arch_dist.R
R/find_decreasing.R
R/find_set_activity.R
R/fit_pch.R
R/gam_deriv.R
R/generate_arc.R
R/geo_sketch.R
R/logistic_model.R
R/logistic_reg_vert.R
R/map_gene_annot.R
R/map_go_annot.R
R/plot_arc.R
R/plot_arc_var.R
R/plot_arch_struct.R
R/plot_gam.R
R/poisson_regression.R
R/project.R
R/rand_var.R
R/utility_functions.R
R/zzz.R
README.md
docs/LICENSE-text.html
docs/articles/Comparison_to_kmeans.html
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docs/articles/Comparison_to_kmeans_files/figure-html/unnamed-chunk-1-1.png
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docs/articles/Comparison_to_kmeans_files/figure-html/unnamed-chunk-2-2.png
docs/articles/Hepatocyte_example.html
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docs/articles/Hepatocyte_example_files/plotly-main-1.39.2/plotly-latest.min.js
docs/articles/Hepatocyte_example_files/plotly-main-1.46.1/plotly-latest.min.js
docs/articles/Hepatocyte_example_files/typedarray-0.1/typedarray.min.js
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docs/pkgdown.js
docs/pkgdown.yml
docs/reference/align_arc.html
docs/reference/annotate_archetypes-1.png
docs/reference/annotate_archetypes.html
docs/reference/arch_dist.html
docs/reference/dot-archLines.html
docs/reference/find_decreasing.html
docs/reference/find_gam_deriv.html
docs/reference/find_set_activity_AUCell.html
docs/reference/fit_logistic_model.html
docs/reference/fit_pch.html
docs/reference/generate_arc.html
docs/reference/geo_sketch.html
docs/reference/hello.html
docs/reference/index.html
docs/reference/install_py_pcha.html
docs/reference/map_gene_annot.html
docs/reference/measure_activity.html
docs/reference/plot_arc-1.png
docs/reference/plot_arc-2.png
docs/reference/plot_arc-3.png
docs/reference/plot_arc-4.png
docs/reference/plot_arc.html
docs/reference/plot_arc_var.html
docs/reference/plot_arch_struct.html
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docs/reference/poisson_regression.html
docs/reference/predict_vert.html
docs/reference/project.html
docs/reference/project_to_pcs-1.png
docs/reference/project_to_pcs-2.png
docs/reference/project_to_pcs-3.png
docs/reference/project_to_pcs.html
docs/reference/rand_var.html
man/align_arc.Rd
man/annotate_archetypes.Rd
man/arch_dist.Rd
man/dot-archLines.Rd
man/find_decreasing.Rd
man/find_gam_deriv.Rd
man/find_set_activity_AUCell.Rd
man/fit_logistic_model.Rd
man/fit_pch.Rd
man/generate_arc.Rd
man/geo_sketch.Rd
man/hello.Rd
man/install_py_pcha.Rd
man/map_gene_annot.Rd
man/measure_activity.Rd
man/plot_arc.Rd
man/plot_arc_var.Rd
man/plot_arch_struct.Rd
man/plot_gam.Rd
man/poisson_regression.Rd
man/predict_vert.Rd
man/project_to_pcs.Rd
man/rand_var.Rd
tests.R
vignettes/Comparison_to_kmeans.Rmd
vignettes/Hepatocyte_example.Rmd
vignettes/introduction.Rmd.zip
vignettes/processed_data/.DS_Store
vignettes/processed_data/GSE84498/GSE84498_experimental_design.txt.gz
vignettes/processed_data/GSE84498/GSE84498_umitab.txt.gz