Man pages for vitkl/ParetoTI
R toolbox for Archetypal Analysis and Pareto Task Inference on single cell data
| align_arc | Match/align arhetypes |
| annotate_archetypes | Annotate archetypes with custom labels |
| arch_dist | Compute distance to archetypes |
| dot-archLines | add a line between all archetypes |
| find_decreasing | Find features that are decreasing functions of distance from... |
| find_gam_deriv | Find derivative of smooth curves from gam model fit... |
| find_set_activity_AUCell | Find activity of a gene set using AUCell model (continuos and... |
| fit_logistic_model | Classify cells with TensorFlow (logistic regression) |
| fit_pch | Find the smallest polytope (Principal Convex Hull) that... |
| generate_arc | Generate random data within specified archetypes |
| geo_sketch | Create downsampled representation of the data with Geometric... |
| hello | Hello, World! |
| install_py_pcha | Install python module py_pcha and numpy |
| map_gene_annot | Convert gene identifiers with AnnotationHub |
| measure_activity | Annotate genes with GO terms and measure their activities |
| plot_arc | Plot data with archetypes in 2D, 3D and a panel of 2D |
| plot_arch_struct | Find and plot similarity structure between archetypes |
| plot_arc_var | Plot variance in positions, t-ratios and variance explained... |
| plot_gam | Plot gam model fit for multiple genes and archetypes... |
| poisson_regression | Poisson regression model to find effects of sample covariates... |
| predict_vert | Logistic regression model to classify vertices |
| project_to_pcs | Project archetypes and data in PCA dimentions |
| rand_var | Permute each column of a matrix by sampling from empirical... |
