sracipeCircuit: Method to get the circuit
In vivekkohar/sRACIPE: Systems biology tool to simulate gene regulatory circuits
Description
Usage
Arguments
Value
Examples
Description
The circuit file should contain three columns with headers,
"Source" "Target" "Type"
Here "Source" and "Target" are the names of the genes and "Type" refers to
the regulation, "1" if source activates target and "2" if source inhibits
target.
Usage
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sracipeCircuit(.object)
## S4 method for signature 'RacipeSE'
sracipeCircuit(.object)
Arguments
.object
RacipeSE object
Value
A dataframe
Examples
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rs <- RacipeSE()
data("demoCircuit")
sracipeCircuit(rs) <- demoCircuit
circuitDataFrame <- sracipeCircuit(rs)
rm(rs, demoCircuit,circuitDataFrame)
vivekkohar/sRACIPE documentation built on March 21, 2021, 8:19 p.m.
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Description Usage Arguments Value Examples
Description
The circuit file should contain three columns with headers, "Source" "Target" "Type" Here "Source" and "Target" are the names of the genes and "Type" refers to the regulation, "1" if source activates target and "2" if source inhibits target.
Usage
1 2 3 4 | sracipeCircuit(.object)
## S4 method for signature 'RacipeSE'
sracipeCircuit(.object)
|
Arguments
.object |
RacipeSE object |
Value
A dataframe
Examples
1 2 3 4 5 | rs <- RacipeSE()
data("demoCircuit")
sracipeCircuit(rs) <- demoCircuit
circuitDataFrame <- sracipeCircuit(rs)
rm(rs, demoCircuit,circuitDataFrame)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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