Files in vivekkohar/test

Systems biology tool to simulate gene regulatory circuits

.DS_Store

.Rbuildignore

.gitattributes

.gitignore

.travis.yml

DESCRIPTION

LICENSE

NAMESPACE

NEWS

R/AllClasses.R R/AllGenerics.R R/RcppExports.R R/data.R R/heatmapSimilarity.R R/methods.R R/sRACIPE.R R/simulateGRC.R R/utility.R README.md

data/CoupledToggleSwitchSA.rda

data/EMT1.rda

data/EMT2.rda

data/configData.rda

data/demoCircuit.rda

docs/404.html

docs/LICENSE-text.html

docs/apple-touch-icon-60x60.png

docs/apple-touch-icon-76x76.png

docs/apple-touch-icon.png

docs/articles/articles/simulatingTrajectories.html

docs/articles/articles/simulatingTrajectories_files/figure-html/unnamed-chunk-1-1.png

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docs/articles/articles/singleModelSimulations.html

docs/articles/articles/singleModelSimulations_files/figure-html/unnamed-chunk-4-1.png

docs/articles/articles/singleModelSimulations_files/figure-html/unnamed-chunk-5-1.png

docs/articles/articles/underTheHood.html

docs/articles/index.html

docs/articles/sRACIPE.html

docs/articles/sRACIPE_files/figure-html/unnamed-chunk-4-1.png

docs/articles/sRACIPE_files/figure-html/unnamed-chunk-4-2.png

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docs/authors.html

docs/bootstrap-toc.css

docs/bootstrap-toc.js

docs/docsearch.css

docs/docsearch.js

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docs/favicon.ico

docs/index.html

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docs/pkgdown.css

docs/pkgdown.js

docs/pkgdown.yml

docs/reference/CoupledToggleSwitchSA.html

docs/reference/EMT1.html

docs/reference/EMT2.html

docs/reference/RacipeSE-class.html

docs/reference/RacipeSE.html

docs/reference/annotation-RacipeSE-method.html

docs/reference/annotation-set-RacipeSE-ANY-method.html

docs/reference/configData.html

docs/reference/demoCircuit.html

docs/reference/densityPlot.html

docs/reference/dot-ModelPvalue.html

docs/reference/dot-NthMin.html

docs/reference/dot-PermutedVar.html

docs/reference/dot-SimulatedPValueAbs.html

docs/reference/dot-SimulatedVarPValue.html

docs/reference/dot-loadNetworkFile.html

docs/reference/index.html

docs/reference/sRACIPE.html

docs/reference/sracipeCircuit-set.html

docs/reference/sracipeCircuit.html

docs/reference/sracipeConfig-set.html

docs/reference/sracipeConfig.html

docs/reference/sracipeGenParamNames.html

docs/reference/sracipeGetTS.html

docs/reference/sracipeHeatmapSimilarity.html

docs/reference/sracipeIC-set.html

docs/reference/sracipeIC.html

docs/reference/sracipeKnockDown.html

docs/reference/sracipeNormalize.html

docs/reference/sracipeOverExp.html

docs/reference/sracipeParams-set.html

docs/reference/sracipeParams.html

docs/reference/sracipePlotCircuit.html

docs/reference/sracipePlotData.html

docs/reference/sracipePlotParamBifur.html

docs/reference/sracipeSimulate.html

inst/.DS_Store

inst/CITATION

inst/logo/logo.png

inst/tinytest/testCircuit.R inst/tinytest/tinytest.R

man/.Rapp.history

man/CoupledToggleSwitchSA.Rd man/EMT1.Rd man/EMT2.Rd man/RacipeSE-class.Rd man/RacipeSE.Rd man/annotation-RacipeSE-method.Rd man/annotation-set-RacipeSE-ANY-method.Rd man/configData.Rd man/demoCircuit.Rd man/densityPlot.Rd man/dot-ModelPvalue.Rd man/dot-NthMin.Rd man/dot-PermutedVar.Rd man/dot-SimulatedPValueAbs.Rd man/dot-SimulatedVarPValue.Rd man/dot-loadNetworkFile.Rd man/sRACIPE.Rd man/sracipeCircuit-set.Rd man/sracipeCircuit.Rd man/sracipeConfig-set.Rd man/sracipeConfig.Rd man/sracipeGenParamNames.Rd man/sracipeGetTS.Rd man/sracipeHeatmapSimilarity.Rd man/sracipeIC-set.Rd man/sracipeIC.Rd man/sracipeKnockDown.Rd man/sracipeNormalize.Rd man/sracipeOverExp.Rd man/sracipeParams-set.Rd man/sracipeParams.Rd man/sracipePlotCircuit.Rd man/sracipePlotData.Rd man/sracipePlotParamBifur.Rd man/sracipeSimulate.Rd

pkgdown/_pkgdown.yml

pkgdown/favicon/apple-touch-icon-60x60.png

pkgdown/favicon/apple-touch-icon-76x76.png

pkgdown/favicon/apple-touch-icon.png

pkgdown/favicon/favicon-16x16.png

pkgdown/favicon/favicon-32x32.png

pkgdown/favicon/favicon.ico

sRACIPE.Rproj

src/Makevars

src/RcppExports.cpp

src/generateThresholds.cpp

src/header.cpp

src/header.h

src/simulateGRC.cpp

src/steppers.cpp

src/utility.cpp

vignettes/articles/simulatingTrajectories.Rmd vignettes/articles/singleModelSimulations.Rmd vignettes/articles/underTheHood.Rmd

vignettes/articles/underTheHood.html

vignettes/sRACIPE.Rmd vignettes/tmp/heatmapSimilarity.Rmd vignettes/tmp/networkConstSim.Rmd

vignettes/tmp/networkConstSim.html

vignettes/tmp/networkConstSim2.Rmd

vignettes/tmp/networkConstSim2.html

vignettes/tmp/networkEval.Rmd vignettes/tmp/simulateGRCParallel.R vignettes/tmp/simulateMS.R vignettes/tmp/testParallel.R

vivekkohar/test documentation built on March 23, 2021, 5:35 a.m.