Man pages for vjcitn/BiocBBSpack
support for build system

add_dependencies-PackageSet-methodmethod for adding dependencies to PackageSet as determined by...
bbs_check_builtnot exported, rely instead on rcmdcheck do check_built and...
bioc_coresetdefine a small collection of packages of interest
bioc_software_packagelistget vector of Bioc software package names
browse_checksdeveloper report on package check process in shiny
build1prepare and build a package tarball, not exported because we...
build1_with_buildsinkrun build1 and capture the R CMD build log
check_for_update_and_pullcheck a git repo for activity at remote, specifically...
chk_shinysimple interface to details about check
covrtabtabulator for covr outputs
cov_tab_demoa list of covr::package_coverage results, thinned for...
covtabs_to_dfconvert result of a collection of 'covr_tab.coverage' results...
default_packtxtNOT EXPORTED - use docker,...
demo_rcmdchk_outa list of rcmdcheck::rcmdcheck results for demonstration...
find_needed_ubuntu_packagesNOT EXPORTED - use docker,...
full_dep_optsa vector listing the key dependencies with correct...
getpkuse HTTPS to clone a package from Bioconductor git
ingest_testsingest test sources for a package
installed_ra vector of package names needed for a fairly complete BBS...
inst_build_checkuse rcmdcheck on a package
list_packs_to_updatecompare destdir to srcdir and list package paths needing...
local_gits_behind_bioccheck all repos in a folder for version entry less than the...
local_gits_with_uninstalled_dependenciesnot clear that this is needed provide a list of packages for...
PackageSetconstructor for PackageSet instances
parallel_tarballscreate tarballs from source folders
populate_local_gitsuse git via BiocBBSpack::getpk to retrieve sources into a...
provision_ubuntuNOT EXPORTED - use docker,...
rcc_to_dataframesproduce list of data.frames for storage of R CMD check...
refresh_local_gitsperform git pull for modified packages in a repo collection
update_status_dbadd a dataframe, optionally purging related obsolete records,...
vjcitn/BiocBBSpack documentation built on Jan. 8, 2020, 4:09 a.m.