| add_dependencies-PackageSet-method | method for adding dependencies to PackageSet as determined by... |
| bbs_check_built | not exported, rely instead on rcmdcheck do check_built and... |
| bioc_3.10_software_2020.03.17 | a vector of package names needed for a fairly complete BBS... |
| bioc_coreset | define a small collection of packages of interest |
| bioc_software_packagelist_old | get vector of Bioc software package names |
| browse_checks | developer report on package check process in shiny |
| build1 | prepare and build a package tarball, not exported because we... |
| build1_with_buildsink | run build1 and capture the R CMD build log |
| build_plus | use rcmdcheck and BiocCheck on a folder with package source... |
| check_for_update_and_pull | check a git repo for activity at remote, specifically... |
| chk_shiny | simple interface to details about check |
| covrtab | tabulator for covr outputs |
| cov_tab_demo | a list of covr::package_coverage results, thinned for... |
| covtabs_to_df | convert result of a collection of 'covr_tab.coverage' results... |
| default_packtxt | NOT EXPORTED - use docker,... |
| demo_rcmdchk_out | a list of rcmdcheck::rcmdcheck results for demonstration... |
| find_needed_ubuntu_packages | NOT EXPORTED - use docker,... |
| full_dep_opts | a vector listing the key dependencies with correct... |
| get_bioc_packagelist | generate a list of packages using the manifest |
| getpk | use HTTPS to clone a package from Bioconductor git |
| getver | in folder superior to a built package, retrieve version |
| ingest_tests | ingest test sources for a package |
| installed_r | a vector of package names needed for a fairly complete BBS... |
| inst_build_check | use rcmdcheck on a package |
| list_packs_to_update | compare destdir to srcdir and list package paths needing... |
| local_gits_behind_bioc | check all repos in a folder for version entry less than the... |
| local_gits_with_uninstalled_dependencies | not clear that this is needed provide a list of packages for... |
| PackageSet | constructor for PackageSet instances |
| parallel_tarballs | create tarballs from source folders |
| populate_local_gits | use git via BiocBBSpack::getpk to retrieve sources into a... |
| provision_ubuntu | NOT EXPORTED - use docker,... |
| rcc_to_dataframes | produce list of data.frames for storage of R CMD check... |
| refresh_local_gits | perform git pull for modified packages in a repo collection |
| soft_021520 | a vector of package names needed for a fairly complete BBS... |
| soft_2020_04_20 | a vector of package names needed for a fairly complete BBS... |
| update_status_db | add a dataframe, optionally purging related obsolete records,... |
| zipit | tar cz a binary package into 'root' folder |
