Man pages for vjcitn/BiocQE
Bioconductor Quality Enhancement
| add_dependencies-PackageSet-method | method for adding dependencies to PackageSet as determined by... |
| bbs_check_built | not exported, rely instead on rcmdcheck do check_built and... |
| bcc_to_dataframes | produce list of data.frames for storage of... |
| bioc_3.10_software_2020.03.17 | a vector of package names needed for a fairly complete BBS... |
| bioc_coreset | define a small collection of packages of interest |
| bioc_maint_packs | a data.frame of packages maintained by Bioconductor Package... |
| browse_checks | developer report on package check process in shiny |
| build1 | prepare and build a package tarball, not exported because we... |
| build1_with_buildsink | run build1 and capture the R CMD build log |
| cov_tab_demo | a list of covr::package_coverage results, thinned for... |
| demo_bccheck_out | a list of BiocCheck::BiocCheck results for demonstration... |
| demo_bcchk_out | a list of BiocCheck::BiocCheck results for demonstration... |
| demo_rcmdcheck_out | a list of rcmdcheck::rcmdcheck results for demonstration... |
| demo_rcmdchk_out | a list of rcmdcheck::rcmdcheck results for demonstration... |
| fulfill_deps | use BiocManager::install to get any unavailable dependencies... |
| full_dep_opts | a vector listing the key dependencies with correct... |
| getpk | use HTTPS to clone a package from Bioconductor git |
| get_pnet | use pkgnet to analyze a source folder (including covr... |
| installed_r | a vector of package names needed for a fairly complete BBS... |
| local_gits_behind_bioc | check all repos in a folder for version entry less than the... |
| local_gits_with_uninstalled_dependencies | not clear that this is needed provide a list of packages for... |
| make_pnet_object | make a serialized collection of pkgnet reports |
| PackageSet | constructor for PackageSet instances |
| populate_local_gits | use git via BiocBBSpack::getpk to retrieve sources into a... |
| print.BBT_pkgnet | compact view of a pkgnet list |
| process_artifacts | process outputs of tbchecks and get_pnet to run browse_checks |
| rcc_to_dataframes | produce list of data.frames for storage of R CMD check... |
| safe_rcmdcheck | deal with errors at _build_ stage when attempting to check |
| soft_021520 | a vector of package names needed for a fairly complete BBS... |
| soft_2020_04_20 | a vector of package names needed for a fairly complete BBS... |
| status_db_init | initialize a status database |
| tbcheck | check an R package tarball |
| update_status_db | add a dataframe, optionally purging related obsolete records,... |
