Files in vjcitn/BiocQE

Bioconductor Quality Enhancement

DESCRIPTION

Dockerfile

NAMESPACE

R/app_support.R R/build1.R R/coreset.R R/data.R R/fulfill_deps.R R/getpk.R R/new.R R/pkgnet.R R/process_artifacts.R R/rcc_to_dataframes.R R/safe_rcmdcheck.R R/status_db.R R/update_status_db.R README.md

_pkgdown.yml

data/bioc_3.10_software_2020.03.17.rda

data/bioc_maint_packs.rda

data/cov_tab_demo.rda

data/demo_bccheck_out.rda

data/demo_bcchk_out.rda

data/demo_rcmdcheck_out.rda

data/demo_rcmdchk_out.rda

data/installed_r.rda

data/soft_021520.rda

data/soft_2020_04_20.rda

docs/404.html

docs/articles/cicd1.html

docs/articles/cicd1_files/figure-html/getg-1.png

docs/articles/corepacks.html

docs/articles/corepacks_files/crosstalk-1.2.0/css/crosstalk.min.css

docs/articles/corepacks_files/crosstalk-1.2.0/js/crosstalk.js

docs/articles/corepacks_files/crosstalk-1.2.0/js/crosstalk.js.map

docs/articles/corepacks_files/crosstalk-1.2.0/js/crosstalk.min.js

docs/articles/corepacks_files/crosstalk-1.2.0/js/crosstalk.min.js.map

docs/articles/corepacks_files/crosstalk-1.2.0/scss/crosstalk.scss

docs/articles/corepacks_files/datatables-binding-0.20/datatables.js

docs/articles/corepacks_files/datatables-css-0.0.0/datatables-crosstalk.css

docs/articles/corepacks_files/dt-core-1.11.3/css/jquery.dataTables.extra.css

docs/articles/corepacks_files/dt-core-1.11.3/css/jquery.dataTables.min.css

docs/articles/corepacks_files/dt-core-1.11.3/js/jquery.dataTables.min.js

docs/articles/corepacks_files/htmlwidgets-1.5.4/htmlwidgets.js

docs/articles/corepacks_files/jquery-3.6.0/jquery-3.6.0.js

docs/articles/corepacks_files/jquery-3.6.0/jquery-3.6.0.min.js

docs/articles/corepacks_files/jquery-3.6.0/jquery-3.6.0.min.map

docs/articles/gcp.html

docs/articles/geoq.png

docs/articles/geoqnet.png

docs/articles/index.html

docs/authors.html

docs/bootstrap-toc.css

docs/bootstrap-toc.js

docs/docsearch.css

docs/docsearch.js

docs/index.html

docs/link.svg

docs/pkgdown.css

docs/pkgdown.js

docs/pkgdown.yml

docs/reference/PackageSet.html

docs/reference/Rplot001.png

docs/reference/add_dependencies-PackageSet-method.html

docs/reference/bbs_check_built.html

docs/reference/bcc_to_dataframes.html

docs/reference/bioc_3.10_software_2020.03.17.html

docs/reference/bioc_coreset.html

docs/reference/bioc_maint_packs.html

docs/reference/bioc_software_packagelist_old.html

docs/reference/browse_checks.html

docs/reference/build1.html

docs/reference/build1_with_buildsink.html

docs/reference/cov_tab_demo.html

docs/reference/demo_bccheck_out.html

docs/reference/demo_bcchk_out.html

docs/reference/demo_rcmdcheck_out.html

docs/reference/demo_rcmdchk_out.html

docs/reference/fulfill_deps.html

docs/reference/full_dep_opts.html

docs/reference/get_pnet.html

docs/reference/getpk.html

docs/reference/index.html

docs/reference/installed_r.html

docs/reference/local_gits_behind_bioc.html

docs/reference/local_gits_with_uninstalled_dependencies.html

docs/reference/make_pnet_object.html

docs/reference/populate_local_gits.html

docs/reference/print.BBT_pkgnet.html

docs/reference/process_artifacts.html

docs/reference/rcc_to_dataframes.html

docs/reference/safe_rcmdcheck.html

docs/reference/soft_021520.html

docs/reference/soft_2020_04_20.html

docs/reference/status_db_init.html

docs/reference/tbcheck.html

docs/reference/update_status_db.html

docs/sitemap.xml

inst/anvil/Dockerfile

inst/app1/server.R inst/app1/ui.R inst/app2/app.R inst/app2/server.R inst/app2/ui.R

inst/demo_srcs/BiocFileCache/.Rbuildignore

inst/demo_srcs/BiocFileCache/DESCRIPTION

inst/demo_srcs/BiocFileCache/NAMESPACE

inst/demo_srcs/BiocFileCache/NEWS

inst/demo_srcs/BiocFileCache/R/BiocFileCache-class.R inst/demo_srcs/BiocFileCache/R/httr.R inst/demo_srcs/BiocFileCache/R/makeBiocFileCacheFromDataFrame.R inst/demo_srcs/BiocFileCache/R/makeCachedActiveBinding.R inst/demo_srcs/BiocFileCache/R/sql.R inst/demo_srcs/BiocFileCache/R/sql_migration.R inst/demo_srcs/BiocFileCache/R/utilities.R inst/demo_srcs/BiocFileCache/README.md inst/demo_srcs/BiocFileCache/TODO.md

inst/demo_srcs/BiocFileCache/inst/schema/BiocFileCache.sql

inst/demo_srcs/BiocFileCache/man/BiocFileCache-class.Rd

inst/demo_srcs/BiocFileCache/man/makeBiocFileCacheFromDataFrame.Rd

inst/demo_srcs/BiocFileCache/man/makeCachedActiveBinding.Rd

inst/demo_srcs/BiocFileCache/tests/testthat.R inst/demo_srcs/BiocFileCache/tests/testthat/test_BiocFileCache_class.R inst/demo_srcs/BiocFileCache/tests/testthat/test_httr.R inst/demo_srcs/BiocFileCache/tests/testthat/test_makeBiocFileCacheFromDataFrame.R inst/demo_srcs/BiocFileCache/tests/testthat/test_sql.R inst/demo_srcs/BiocFileCache/tests/testthat/test_sql_migration.R inst/demo_srcs/BiocFileCache/tests/testthat/test_utility.R inst/demo_srcs/BiocFileCache/vignettes/BiocFileCache.Rmd

inst/demo_srcs/BiocFileCache_1.15.1.tar.gz

inst/demo_srcs/BiocFileCache_bcchk.rds

inst/demo_srcs/BiocFileCache_chk.rds

inst/demo_srcs/IRanges/DESCRIPTION

inst/demo_srcs/IRanges/NAMESPACE

inst/demo_srcs/IRanges/NEWS

inst/demo_srcs/IRanges/R/AtomicList-class.R inst/demo_srcs/IRanges/R/AtomicList-utils.R inst/demo_srcs/IRanges/R/CompressedAtomicList-class.R inst/demo_srcs/IRanges/R/CompressedDataFrameList-class.R inst/demo_srcs/IRanges/R/CompressedGrouping-class.R inst/demo_srcs/IRanges/R/CompressedHitsList-class.R inst/demo_srcs/IRanges/R/CompressedList-class.R inst/demo_srcs/IRanges/R/CompressedList-comparison.R inst/demo_srcs/IRanges/R/CompressedRangesList-class.R inst/demo_srcs/IRanges/R/DataFrameList-class.R inst/demo_srcs/IRanges/R/DataFrameList-utils.R inst/demo_srcs/IRanges/R/Grouping-class.R inst/demo_srcs/IRanges/R/Hits-class-leftovers.R inst/demo_srcs/IRanges/R/IPos-class.R inst/demo_srcs/IRanges/R/IPosList-class.R inst/demo_srcs/IRanges/R/IPosRanges-class.R inst/demo_srcs/IRanges/R/IPosRanges-comparison.R inst/demo_srcs/IRanges/R/IRanges-class.R inst/demo_srcs/IRanges/R/IRanges-constructor.R inst/demo_srcs/IRanges/R/IRanges-utils.R inst/demo_srcs/IRanges/R/IRangesList-class.R inst/demo_srcs/IRanges/R/IntegerRangesList-class.R inst/demo_srcs/IRanges/R/MaskCollection-class.R inst/demo_srcs/IRanges/R/NCList-class.R inst/demo_srcs/IRanges/R/RangedSelection-class.R inst/demo_srcs/IRanges/R/Ranges-and-RangesList-classes.R inst/demo_srcs/IRanges/R/Rle-class-leftovers.R inst/demo_srcs/IRanges/R/RleViews-class.R inst/demo_srcs/IRanges/R/RleViews-utils.R inst/demo_srcs/IRanges/R/RleViewsList-class.R inst/demo_srcs/IRanges/R/RleViewsList-utils.R inst/demo_srcs/IRanges/R/SimpleGrouping-class.R inst/demo_srcs/IRanges/R/Vector-class-leftovers.R inst/demo_srcs/IRanges/R/Views-class.R inst/demo_srcs/IRanges/R/ViewsList-class.R inst/demo_srcs/IRanges/R/cbind-Rle-methods.R inst/demo_srcs/IRanges/R/coverage-methods.R inst/demo_srcs/IRanges/R/cvg-methods.R inst/demo_srcs/IRanges/R/extractList.R inst/demo_srcs/IRanges/R/extractListFragments.R inst/demo_srcs/IRanges/R/findOverlaps-methods.R inst/demo_srcs/IRanges/R/inter-range-methods.R inst/demo_srcs/IRanges/R/intra-range-methods.R inst/demo_srcs/IRanges/R/multisplit.R inst/demo_srcs/IRanges/R/nearest-methods.R inst/demo_srcs/IRanges/R/range-squeezers.R inst/demo_srcs/IRanges/R/read.Mask.R inst/demo_srcs/IRanges/R/reverse-methods.R inst/demo_srcs/IRanges/R/seqapply.R inst/demo_srcs/IRanges/R/setops-methods.R inst/demo_srcs/IRanges/R/slice-methods.R inst/demo_srcs/IRanges/R/subsetting-utils.R inst/demo_srcs/IRanges/R/tile-methods.R inst/demo_srcs/IRanges/R/windows-methods.R inst/demo_srcs/IRanges/R/zzz.R inst/demo_srcs/IRanges/README.md

inst/demo_srcs/IRanges/TODO

inst/demo_srcs/IRanges/inst/CITATION

inst/demo_srcs/IRanges/inst/extdata/ce2chrM.bed

inst/demo_srcs/IRanges/inst/extdata/ce2chrM.fa.out

inst/demo_srcs/IRanges/inst/extdata/hg18liftAll.lft

inst/demo_srcs/IRanges/inst/extdata/hs_b36v3_chrY.agp

inst/demo_srcs/IRanges/inst/include/IRanges_defines.h

inst/demo_srcs/IRanges/inst/include/IRanges_interface.h

inst/demo_srcs/IRanges/inst/include/_IRanges_stubs.c

inst/demo_srcs/IRanges/inst/unitTests/test_AtomicList-class.R inst/demo_srcs/IRanges/inst/unitTests/test_AtomicList-utils.R inst/demo_srcs/IRanges/inst/unitTests/test_DataFrame-utils.R inst/demo_srcs/IRanges/inst/unitTests/test_DataFrameList.R inst/demo_srcs/IRanges/inst/unitTests/test_Grouping-class.R inst/demo_srcs/IRanges/inst/unitTests/test_HitsList.R inst/demo_srcs/IRanges/inst/unitTests/test_IPos-class.R inst/demo_srcs/IRanges/inst/unitTests/test_IRanges-class.R inst/demo_srcs/IRanges/inst/unitTests/test_IRanges-constructor.R inst/demo_srcs/IRanges/inst/unitTests/test_IRangesList-class.R inst/demo_srcs/IRanges/inst/unitTests/test_NCList-class.R inst/demo_srcs/IRanges/inst/unitTests/test_Ranges-comparison.R inst/demo_srcs/IRanges/inst/unitTests/test_RleViews.R inst/demo_srcs/IRanges/inst/unitTests/test_RleViewsList.R inst/demo_srcs/IRanges/inst/unitTests/test_coverage-methods.R inst/demo_srcs/IRanges/inst/unitTests/test_extractList.R inst/demo_srcs/IRanges/inst/unitTests/test_findOverlaps-methods.R inst/demo_srcs/IRanges/inst/unitTests/test_inter-range-methods.R inst/demo_srcs/IRanges/inst/unitTests/test_intra-range-methods.R inst/demo_srcs/IRanges/inst/unitTests/test_nearest-methods.R inst/demo_srcs/IRanges/inst/unitTests/test_seqapply.R inst/demo_srcs/IRanges/inst/unitTests/test_setops-methods.R inst/demo_srcs/IRanges/inst/unitTests/test_split.R inst/demo_srcs/IRanges/inst/unitTests/test_splitListElements.R inst/demo_srcs/IRanges/inst/unitTests/test_tile-methods.R

inst/demo_srcs/IRanges/man/AtomicList-class.Rd

inst/demo_srcs/IRanges/man/AtomicList-utils.Rd

inst/demo_srcs/IRanges/man/CompressedHitsList-class.Rd

inst/demo_srcs/IRanges/man/CompressedList-class.Rd

inst/demo_srcs/IRanges/man/DataFrameList-class.Rd

inst/demo_srcs/IRanges/man/Grouping-class.Rd

inst/demo_srcs/IRanges/man/Hits-class-leftovers.Rd

inst/demo_srcs/IRanges/man/IPos-class.Rd

inst/demo_srcs/IRanges/man/IPosRanges-class.Rd

inst/demo_srcs/IRanges/man/IPosRanges-comparison.Rd

inst/demo_srcs/IRanges/man/IRanges-class.Rd

inst/demo_srcs/IRanges/man/IRanges-constructor.Rd

inst/demo_srcs/IRanges/man/IRanges-internals.Rd

inst/demo_srcs/IRanges/man/IRanges-utils.Rd

inst/demo_srcs/IRanges/man/IRangesList-class.Rd

inst/demo_srcs/IRanges/man/IntegerRanges-class.Rd

inst/demo_srcs/IRanges/man/IntegerRangesList-class.Rd

inst/demo_srcs/IRanges/man/MaskCollection-class.Rd

inst/demo_srcs/IRanges/man/NCList-class.Rd

inst/demo_srcs/IRanges/man/RangedSelection-class.Rd

inst/demo_srcs/IRanges/man/Rle-class-leftovers.Rd

inst/demo_srcs/IRanges/man/RleViews-class.Rd

inst/demo_srcs/IRanges/man/RleViewsList-class.Rd

inst/demo_srcs/IRanges/man/Vector-class-leftovers.Rd

inst/demo_srcs/IRanges/man/Views-class.Rd

inst/demo_srcs/IRanges/man/ViewsList-class.Rd

inst/demo_srcs/IRanges/man/coverage-methods.Rd

inst/demo_srcs/IRanges/man/extractList.Rd

inst/demo_srcs/IRanges/man/extractListFragments.Rd

inst/demo_srcs/IRanges/man/findOverlaps-methods.Rd

inst/demo_srcs/IRanges/man/inter-range-methods.Rd

inst/demo_srcs/IRanges/man/intra-range-methods.Rd

inst/demo_srcs/IRanges/man/multisplit.Rd

inst/demo_srcs/IRanges/man/nearest-methods.Rd

inst/demo_srcs/IRanges/man/range-squeezers.Rd

inst/demo_srcs/IRanges/man/read.Mask.Rd

inst/demo_srcs/IRanges/man/reverse-methods.Rd

inst/demo_srcs/IRanges/man/seqapply.Rd

inst/demo_srcs/IRanges/man/setops-methods.Rd

inst/demo_srcs/IRanges/man/slice-methods.Rd

inst/demo_srcs/IRanges/man/view-summarization-methods.Rd

inst/demo_srcs/IRanges/src/CompressedAtomicList_utils.c

inst/demo_srcs/IRanges/src/CompressedIRangesList_class.c

inst/demo_srcs/IRanges/src/CompressedList_class.c

inst/demo_srcs/IRanges/src/Grouping_class.c

inst/demo_srcs/IRanges/src/IPosRanges_comparison.c

inst/demo_srcs/IRanges/src/IRanges.h

inst/demo_srcs/IRanges/src/IRanges_class.c

inst/demo_srcs/IRanges/src/IRanges_constructor.c

inst/demo_srcs/IRanges/src/NCList.c

inst/demo_srcs/IRanges/src/R_init_IRanges.c

inst/demo_srcs/IRanges/src/Ranges_class.c

inst/demo_srcs/IRanges/src/RleViews_utils.c

inst/demo_srcs/IRanges/src/S4Vectors_stubs.c

inst/demo_srcs/IRanges/src/SimpleIRangesList_class.c

inst/demo_srcs/IRanges/src/coverage_methods.c

inst/demo_srcs/IRanges/src/extractListFragments.c

inst/demo_srcs/IRanges/src/inter_range_methods.c

inst/demo_srcs/IRanges/tests/run_unitTests.R

inst/demo_srcs/IRanges/vignettes/IRangesOverview.Rnw

inst/demo_srcs/IRanges_2.26.0.tar.gz

inst/demo_srcs/IRanges_bcchk.rds

inst/demo_srcs/IRanges_chk.rds

inst/demo_srcs/parody/.Rbuildignore

inst/demo_srcs/parody/DESCRIPTION

inst/demo_srcs/parody/NAMESPACE

inst/demo_srcs/parody/NEWS

inst/demo_srcs/parody/R/CPexchC.R inst/demo_srcs/parody/R/mv.calout.detect.R inst/demo_srcs/parody/R/univ.R inst/demo_srcs/parody/README.md

inst/demo_srcs/parody/data/bushfire.rda

inst/demo_srcs/parody/data/tcost.rda

inst/demo_srcs/parody/inst/old/parody.Rnw

inst/demo_srcs/parody/man/box.scale.Rd

inst/demo_srcs/parody/man/bushfire.Rd

inst/demo_srcs/parody/man/calout.detect.Rd

inst/demo_srcs/parody/man/mv.calout.detect.Rd

inst/demo_srcs/parody/man/shorth.Rd

inst/demo_srcs/parody/man/tcost.Rd

inst/demo_srcs/parody/man/tukeyor.Rd

inst/demo_srcs/parody/tests/test.R inst/demo_srcs/parody/tests/testthat/tests.R inst/demo_srcs/parody/vignettes/parody.Rmd

inst/demo_srcs/parody_1.49.10.tar.gz

inst/demo_srcs/parody_bcchk.rds

inst/demo_srcs/parody_chk.rds

inst/images/dockerhub_result.png

inst/pkgnet/demo16_pnet.rds

inst/pkgnet/demo2.zip

inst/pkgnet/demo_pnet.rda

inst/pkgnet/demo_pnet2.rda

inst/pkgnet/indiv3.zip

inst/pkgnet/pnet.rds

inst/scripts/continue.R inst/scripts/dbwork.R inst/scripts/dobuilds.R inst/scripts/fullrun.R inst/scripts/pn.R

inst/scripts/rcc1_safe.rda

inst/scripts/runapp.R inst/scripts/runqe.R

inst/sqlite/demo16.sqlite

inst/sqlite/demo2.sqlite

inst/sqlite/demo9.sqlite

inst/sqlite/vjc3.sqlite

inst/text/bioc_core_packs - simplecore.csv

man/PackageSet.Rd man/add_dependencies-PackageSet-method.Rd man/bbs_check_built.Rd man/bcc_to_dataframes.Rd man/bioc_3.10_software_2020.03.17.Rd man/bioc_coreset.Rd man/bioc_maint_packs.Rd man/browse_checks.Rd man/build1.Rd man/build1_with_buildsink.Rd man/cov_tab_demo.Rd man/demo_bccheck_out.Rd man/demo_bcchk_out.Rd man/demo_rcmdcheck_out.Rd man/demo_rcmdchk_out.Rd man/fulfill_deps.Rd man/full_dep_opts.Rd man/get_pnet.Rd man/getpk.Rd man/installed_r.Rd man/local_gits_behind_bioc.Rd man/local_gits_with_uninstalled_dependencies.Rd man/make_pnet_object.Rd man/populate_local_gits.Rd man/print.BBT_pkgnet.Rd man/process_artifacts.Rd man/rcc_to_dataframes.Rd man/safe_rcmdcheck.Rd man/soft_021520.Rd man/soft_2020_04_20.Rd man/status_db_init.Rd man/tbcheck.Rd man/update_status_db.Rd tests/testthat.R tests/testthat/test_bbs.R

vignettes/.gitignore

vignettes/cicd1.Rmd vignettes/corepacks.Rmd

vignettes/early.png

vignettes/gcp.Rmd

vignettes/geoq.png

vignettes/geoqnet.png

vignettes/more

vignettes/simplecore.csv

vjcitn/BiocQE documentation built on Dec. 30, 2021, 12:20 a.m.