process_artifacts: process outputs of tbchecks and get_pnet to run browse_checks

In vjcitn/BiocQE: Bioconductor Quality Enhancement

Description

process outputs of tbchecks and get_pnet to run browse_checks

Usage

process_artifacts(
  dbpath = tempfile(),
  run_app = TRUE,
  startup = TRUE,
  serialize_pnet = TRUE,
  pnet_obj_name = "pnet.rds"
)

Arguments

dbpath	character(1) a SQLite database will be produced here
run_app	logical(1) defaults to TRUE; runs browse_checks on available data
startup	logical(1) defaults to TRUE; passed to status_db_init
serialize_pnet	logical(1) if TRUE emits list of pkgnet outputs as RDS
pnet_obj_name	character(1) defaults to "pnet.rds"

Note

Starts a SQLite connection. The connection is closed in the call to dbConnect, this should be conditioned with an on.exit here in case the connection was not closed. If run_app is FALSE, the connection is closed on exit. This function will create a SQLite database and list of pkgnet objects for use with browse_checks.

vjcitn/BiocQE documentation built on Dec. 30, 2021, 12:20 a.m.