inst/demo_srcs/BiocFileCache/TODO.md

In vjcitn/BiocQE: Bioconductor Quality Enhancement

quick run

library(devtools) library(RSQLite) library(DBI) library(dplyr) library(httr) library(testthat) document() install() library(BiocFileCache) example("BiocFileCache-class")

SCHEMA help

library(devtools) library(RSQLite) library(dplyr) library(httr) library(DBI) install() library(BiocFileCache) source("R/utilities.R") source("R/sql.R")

bfc = BiocFileCache()

bfc0 <- BiocFileCache(tempfile()) path <- bfcnew(bfc0, "NewResource")

sqlfile <- .sql_dbfile(bfc0) con <- dbConnect(SQLite(), sqlfile) dbReadTable(con, "resource")

meta data testing

x = BiocFileCache()

bfcinfo()

bfclistmeta()

meta = as.data.frame(list(rid=c("BFC1", "BFC3"), info=c("something", "to add"), num=c(1,3))) meta2 = as.data.frame(list(rid=c("BFC5", "BFC6"), new=c("blah", "foo"), info=c(4,6)))

bfcaddmeta(meta=meta) bfcaddmeta(meta=meta2) bfcaddmeta(meta=meta2, name="secondname")

bfclistmeta()

bfcinfo() bfcinfo(rids=c("BFC11", "BFC7")) bfcgetmeta(name="resourcedata")

vjcitn/BiocQE documentation built on Dec. 30, 2021, 12:20 a.m.