GenomicRangesList-class: GenomicRangesList objects

In vjcitn/GenomicRangesGHA: Representation and manipulation of genomic intervals; demo with github actions binary generation

Description

The GenomicRangesList virtual class is a general container for storing a list of GenomicRanges objects.

Most users are probably more interested in the GRangesList container, a GenomicRangesList derivative for storing a list of GRanges objects.

Details

The place of GenomicRangesList in the Vector class hierarchy:

                               Vector
                                 ^
                                 |
                                List
                                 ^
                                 |
                             RangesList
                              ^     ^
                             /       \
                            /         \
                           /           \
                          /             \
                         /               \
                        /                 \
         IntegerRangesList               GenomicRangesList
                ^                                 ^
                |                                 |
           IRangesList                       GRangesList
             ^     ^                           ^     ^
            /       \                         /       \
           /         \                       /         \
          /           \                     /           \
   SimpleIRangesList   \             SimpleGRangesList   \
            CompressedIRangesList             CompressedGRangesList
  

Note that the Vector class hierarchy has many more classes. In particular Vector, List, IRangesList, and IntegerRangesList have other subclasses not shown here.

Author(s)

H. Pagès and M. Lawrence

See Also

• GRangesList objects.

• GenomicRanges and GRanges objects.

vjcitn/GenomicRangesGHA documentation built on Jan. 18, 2021, 12:39 a.m.