Files in vjcitn/GenomicRangesGHA
Representation and manipulation of genomic intervals; demo with github actions binary generation
.github/workflows/tic.yml
DESCRIPTION
NAMESPACE
NEWS
R/DelegatingGenomicRanges-class.R
R/GNCList-class.R
R/GPos-class.R
R/GRanges-class.R
R/GRangesFactor-class.R
R/GRangesList-class.R
R/GenomicRanges-class.R
R/GenomicRanges-comparison.R
R/GenomicRangesList-class.R
R/RangedData-methods.R
R/absoluteRanges.R
R/constraint.R
R/coverage-methods.R
R/findOverlaps-methods.R
R/genomic-range-squeezers.R
R/genomicvars.R
R/inter-range-methods.R
R/intra-range-methods.R
R/makeGRangesFromDataFrame.R
R/makeGRangesListFromDataFrame.R
R/nearest-methods.R
R/normarg-utils.R
R/phicoef.R
R/setops-methods.R
R/strand-utils.R
R/tile-methods.R
R/tileGenome.R
R/transcript-utils.R
R/utils.R
R/zzz.R
README.md
inst/CITATION
inst/extdata/feature_frags.txt
inst/scripts/timing_overlaps.R
inst/slides/GRanges_and_GRangesList_slides.pdf
inst/slides/Ten_things_slides.pdf
inst/unitTests/ranges-disjoin-ir0-plot.png
inst/unitTests/ranges-ir0-plot.png
inst/unitTests/ranges-reduce-ir0-plot.png
inst/unitTests/ranges-shift-ir0-plot.png
inst/unitTests/test_GNCList-class.R
inst/unitTests/test_GRanges-class.R
inst/unitTests/test_GRangesList-class.R
inst/unitTests/test_GenomicRanges-comparison.R
inst/unitTests/test_coverage-methods.R
inst/unitTests/test_findOverlaps-methods.R
inst/unitTests/test_inter-range-methods.R
inst/unitTests/test_intra-range-methods.R
inst/unitTests/test_makeGRangesFromDataFrame.R
inst/unitTests/test_makeGRangesListFromDataFrame.R
inst/unitTests/test_nearest-methods.R
inst/unitTests/test_precede_follow.R
inst/unitTests/test_setops-methods.R
inst/unitTests/test_slides.R
inst/unitTests/test_ten_things.R
man/DelegatingGenomicRanges-class.Rd
man/GNCList-class.Rd
man/GPos-class.Rd
man/GRanges-class.Rd
man/GRangesFactor-class.Rd
man/GRangesList-class.Rd
man/GenomicRanges-comparison.Rd
man/GenomicRangesList-class.Rd
man/absoluteRanges.Rd
man/constraint.Rd
man/coverage-methods.Rd
man/findOverlaps-methods.Rd
man/genomic-range-squeezers.Rd
man/genomicvars.Rd
man/inter-range-methods.Rd
man/intra-range-methods.Rd
man/makeGRangesFromDataFrame.Rd
man/makeGRangesListFromDataFrame.Rd
man/nearest-methods.Rd
man/phicoef.Rd
man/setops-methods.Rd
man/strand-utils.Rd
man/tile-methods.Rd
man/tileGenome.Rd
src/GenomicRangesGHA.h
src/IRanges_stubs.c
src/R_init_GenomicRangesGHA.c
src/S4Vectors_stubs.c
src/transcript_utils.c
tests/run_unitTests.R
tic.R
vignettes/ExtendingGenomicRanges.R
vignettes/ExtendingGenomicRanges.Rmd
vignettes/GRanges_and_GRangesList_slides.R
vignettes/GenomicRangesGHA.bib
vignettes/GenomicRangesHOWTOs.R
vignettes/GenomicRangesHOWTOs.Rmd
vignettes/GenomicRangesIntroduction.R
vignettes/GenomicRangesIntroduction.Rmd
vignettes/Ten_things_slides.R
vignettes/ranges-disjoin-ir0-plot.png
vignettes/ranges-ir0-plot.png
vignettes/ranges-reduce-ir0-plot.png
vignettes/ranges-shift-ir0-plot.png
vignettes/slides.sty
