Man pages for vjcitn/YESCDS
Cancer data science activities for CZI YES for CURE collaboration
| brcamutSE | a SummarizedExperiment collecting BRCA mutations and colData... |
| build_deck | make a deck of cards with 52 elements and unicode symbols for... |
| build_simple_survival_curve | utility for survival curve illustration |
| build_surv_for_mut | use curatedTCGAData to produce survival time structure and... |
| canada_crude | a data.frame with (rounded) crude rates of cancer as... |
| cancer_map_app | use shiny for a simple cancer map, by type, for US |
| cancer_map_usa | simple function for site-specific map |
| cancer_map_world | simple map of cancer rates world wide |
| compare_tumors | compare multiple tumor times with respect to survival |
| do_new_surv | utility for survival curve, alternate shape |
| faces | get faces of a collection of cards |
| filter_woncan | generate site-specific rate table |
| full_house | test for full house |
| has_mut_in | check all columns for presence of symbol in a SE with ragged... |
| is_flush | test for flush |
| MA_cancer_rate_table | simple tables of confidence intervals for cancer incidence |
| make_comparison | make an interactive histogram of rate ratios, or a... |
| make_hist | make an interactive histogram for a given cancer site, based... |
| make_pair | make interactive beeswarm or box plots for all cancer... |
| map_app | use shiny to explore aspects of geographic mapping |
| mass_cancer_map | map cancer rates for selected sites to MA counties |
| mass_map | simple function to display HTML map of MA |
| metabric | a data.frame with clinical features of a breast cancer study... |
| one_pair | test for one pair |
| ordered_seg_cal | big display of ordered CIs for California Lung and Bronchus... |
| plot_seer_trend | plot the rate statistics over time for selected cancer sites... |
| plot.two_sample_mut_surv | plot method |
| plotwci | simple display of confidence intervals for cancer incidence |
| print.two_sample_mut_surv | print method |
| prostate_met_adeno | a data.frame with clinical features of a metastatic prostate... |
| SEER_2018 | a data.frame with SEER estimates of cancer incidence for 2018 |
| show_5y_estimate | utility for survival curve illustration: 5y survprob estimate... |
| show_median_estimate | utility for survival curve illustration: median estimate... |
| statcrunch_msa | geographic information from statcrunch.com on metropolitan... |
| suits | get suits of a collection of cards |
| summary.two_sample_mut_surv | summary method |
| table_woncan | simplify table view of WONDER CDC statistsics |
| two_pairs | test for two pairs |
| two_sample_surv_setup | two-sample survival comparison dependent on mutation present... |
| us_county_geo | locations of US counties |
| us_map | simple function to display HTML map of US |
| variation_app | simple app to show different ways of examining variation over... |
| vjc_cancer_net | a table of data of Vince's contacts who developed cancer |
| woncan | cancer rate data by metropolitan statistical area, 1999-2018,... |
| woncan_meta | metadata on cancer rate data by metropolitan statistical... |
| woncan_types | generate vector of cancer sites in CDC Wonder table |
| world_cancer_2020_all | a table of cancer rate data by country, retrieved from... |
| world_geo_sf | a simple features (sf) instance with boundaries and centroids... |
