get_hcc_spatial_path: retrieve or cache SingleCellExperiment data for spatial...

In vjcitn/YESCDS: Cancer data science activities for CZI YES for CURE collaboration

retrieve or cache SingleCellExperiment data for spatial transcriptomics of HCC

Description

retrieve or cache SingleCellExperiment data for spatial transcriptomics of HCC

Usage

get_hcc_spatial_path(sample = "1R", cache = BiocFileCache::BiocFileCache())

Arguments

sample	character(1) either "1R" or "6NR"
cache	cache instance likely inheriting from BiocFileCache::BiocFileCache

Value

character(1) path to rda file

Note

https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM7661255 is the basis for the "1R" example. https://pubmed.ncbi.nlm.nih.gov/37723590/ is the primary paper.

Examples

get_hcc_spatial_path()

vjcitn/YESCDS documentation built on Oct. 30, 2024, 1:18 p.m.