linetrack_covg_by_symbol: produce a TnT::LineTrack with coverage information for a...

Description Usage Arguments Examples

View source: R/readcov.R

Description

produce a TnT::LineTrack with coverage information for a selected gene+radius

Usage

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linetrack_covg_by_symbol(sym, bamf, radius = 0, ...)

Arguments

sym

a gene symbol

bamf

a path to indexed BAM file

radius

numeric(1) defaulting to zero, upstream/downstream extra reach

...

passed to LineTrack, so can include color, etc.

Examples

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if (requireNamespace("RNAseqData.HNRNPC.bam.chr14")) {
  f1 = RNAseqData.HNRNPC.bam.chr14::RNAseqData.HNRNPC.bam.chr14_BAMFILES[1]
  linetrack_covg_by_symbol("HNRNPC", f1, color="gray")
}

vjcitn/biocwk312 documentation built on Jan. 1, 2021, 12:41 p.m.