read_covg_by_symbol: produce a coverage RLE given a gene symbol, hg19-based
In vjcitn/biocwk312: Workshop intro for Bioconductor 3.12.
Description
Usage
Arguments
Note
Examples
Description
produce a coverage RLE given a gene symbol, hg19-based
Usage
1
read_covg_by_symbol(sym, bamf, radius = 0)
Arguments
sym
a gene symbol
bamf
a path to indexed BAM file
radius
numeric(1) defaulting to zero, upstream/downstream extra reach
Note
Uses genes_df_hg19 to find address of gene.
Examples
1
2
3
4
if (requireNamespace("RNAseqData.HNRNPC.bam.chr14")) {
f1 = RNAseqData.HNRNPC.bam.chr14::RNAseqData.HNRNPC.bam.chr14_BAMFILES[1]
read_covg_by_symbol("HNRNPC", f1)
}
vjcitn/biocwk312 documentation built on Jan. 1, 2021, 12:41 p.m.
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Description Usage Arguments Note Examples
Description
produce a coverage RLE given a gene symbol, hg19-based
Usage
1 | read_covg_by_symbol(sym, bamf, radius = 0)
|
Arguments
sym |
a gene symbol |
bamf |
a path to indexed BAM file |
radius |
numeric(1) defaulting to zero, upstream/downstream extra reach |
Note
Uses genes_df_hg19 to find address of gene.
Examples
1 2 3 4 | if (requireNamespace("RNAseqData.HNRNPC.bam.chr14")) {
f1 = RNAseqData.HNRNPC.bam.chr14::RNAseqData.HNRNPC.bam.chr14_BAMFILES[1]
read_covg_by_symbol("HNRNPC", f1)
}
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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