bind_sym: helper for converting ENSG to symbols, cbinding symbol and...

In vjcitn/gwaslake: Workshop for exploring MRC IEU GWAS analysis ecosystem with Bioconductor

helper for converting ENSG to symbols, cbinding symbol and chromosome name for the genes to the input data.frame-like entity

Description

helper for converting ENSG to symbols, cbinding symbol and chromosome name for the genes to the input data.frame-like entity

Usage

bind_sym(
  dflike,
  gene_resource = genes_v75,
  ensgvbl = "trait",
  output_symvbl = "symbol",
  output_chromvbl = "gchrom"
)

Arguments

dflike	a data.frame-like entity with a column of ENSG gene identifiers; column name must be the value of bind_sym parameter ensgvbl
gene_resource	a data.frame with columns gene_name and seqnames, defaulting to gwaslake::genes_v75
ensgvbl	character(1) the column of dflike holding the ENSG ids
output_symvbl	character(1) name to be used for symbol in output data.frame, defaults to symbol
output_chromvbl	character(1) name to be used for chromosome in output data.frame, defaults to gchrom

Examples

head(little_eq)
head(bind_sym(little_eq))

vjcitn/gwaslake documentation built on Aug. 9, 2022, 5:45 p.m.