ieutab_to_GRanges: IEU tables conversion to GRanges
In vjcitn/gwaslake: Workshop for exploring MRC IEU GWAS analysis ecosystem with Bioconductor
ieutab_to_GRanges R Documentation
IEU tables conversion to GRanges
Description
IEU tables conversion to GRanges
Usage
ieutab_to_GRanges(ieutab, build = "GRCh37")
Arguments
ieutab
data.frame-like entity as returned by e.g., variant_rsid, associations, phewas
build
character(1) defaults to "GRCh37"
Note
assumes SNP; renames 'pos' to 'position' if necessary
Examples
if (requireNamespace("ieugwasr")) {
ex = ieugwasr::variants_rsid("rs6060535")
ieutab_to_GRanges(ex)
}
vjcitn/gwaslake documentation built on Aug. 9, 2022, 5:45 p.m.
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| ieutab_to_GRanges | R Documentation |
IEU tables conversion to GRanges
Description
IEU tables conversion to GRanges
Usage
ieutab_to_GRanges(ieutab, build = "GRCh37")
Arguments
ieutab |
data.frame-like entity as returned by e.g., variant_rsid, associations, phewas |
build |
character(1) defaults to "GRCh37" |
Note
assumes SNP; renames 'pos' to 'position' if necessary
Examples
if (requireNamespace("ieugwasr")) {
ex = ieugwasr::variants_rsid("rs6060535")
ieutab_to_GRanges(ex)
}
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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