downloadPopByChr: download hapmap resource with LD estimates
In vjcitn/ldblock: data structures for linkage disequilibrium measures in populations
Description
Usage
Arguments
Details
Value
Examples
Description
download hapmap resource with LD estimates
Usage
1
2
3
downloadPopByChr(chrname = "chr1", popname = "CEU",
urlTemplate = "http://hapmap.ncbi.nlm.nih.gov/downloads/ld_data/2009-02_phaseIII_r2/ld_%%CHRN%%_%%POPN%%.txt.gz",
targfolder = Sys.getenv("LDBLOCK_TXTGZ_DIR"))
Arguments
chrname
UCSC format tag for chromosome
popname
hapmap three letter code for population, e.g. 'CEU'
urlTemplate
pattern for creating URL given chr and pop
targfolder
destination
Details
delivers HapMap LD data to 'targfolder'
Value
just run for side effect of download.file
Examples
1
2
3
4
## Not run:
downloadPopByChr()
## End(Not run)
vjcitn/ldblock documentation built on Aug. 21, 2019, 8:50 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Details Value Examples
Description
download hapmap resource with LD estimates
Usage
1 2 3 | downloadPopByChr(chrname = "chr1", popname = "CEU",
urlTemplate = "http://hapmap.ncbi.nlm.nih.gov/downloads/ld_data/2009-02_phaseIII_r2/ld_%%CHRN%%_%%POPN%%.txt.gz",
targfolder = Sys.getenv("LDBLOCK_TXTGZ_DIR"))
|
Arguments
chrname |
UCSC format tag for chromosome |
popname |
hapmap three letter code for population, e.g. 'CEU' |
urlTemplate |
pattern for creating URL given chr and pop |
targfolder |
destination |
Details
delivers HapMap LD data to 'targfolder'
Value
just run for side effect of download.file
Examples
1 2 3 4 | ## Not run:
downloadPopByChr()
## End(Not run)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.