ldmat: use LDmat API from NCI LDlink service
In vjcitn/ldblock: data structures for linkage disequilibrium measures in populations
Description
Usage
Arguments
Value
Examples
Description
use LDmat API from NCI LDlink service
Usage
1
2
ldmat(rsvec, pop = "CEU", type = "d",
token = Sys.getenv("LDLINK_TOKEN"))
Arguments
rsvec
character vector of SNP ids
pop
three letter code for HapMap population, defaults to CEU
type
'r2' or 'd', defaults to 'd' implying d-prime
token
the API token provided by NCI, defaults to value of environment variable LDLINK_TOKEN
Value
data.frame
Examples
1
if (interactive()) ldmat(c("rs77749396","rs9303279","rs9303280","rs9303281"))
vjcitn/ldblock documentation built on Aug. 21, 2019, 8:50 p.m.
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Description Usage Arguments Value Examples
Description
use LDmat API from NCI LDlink service
Usage
1 2 | ldmat(rsvec, pop = "CEU", type = "d",
token = Sys.getenv("LDLINK_TOKEN"))
|
Arguments
rsvec |
character vector of SNP ids |
pop |
three letter code for HapMap population, defaults to CEU |
type |
'r2' or 'd', defaults to 'd' implying d-prime |
token |
the API token provided by NCI, defaults to value of environment variable LDLINK_TOKEN |
Value
data.frame
Examples
1 | if (interactive()) ldmat(c("rs77749396","rs9303279","rs9303280","rs9303281"))
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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