R/readCounts.R
In vjcitn/leeBamViews: leeBamViews -- multiple yeast RNAseq samples excerpted from Lee 2009
setGeneric("totalReadCounts", function(x)standardGeneric("totalReadCounts"))
setMethod("totalReadCounts", "BamViews", function(x) {
tmp = lapply( bamPaths(x), scanBam, param=ScanBamParam(what="pos"))
ans = sapply(tmp, function(x) length(x[[1]][[1]]))
names(ans) = sapply( bamPaths(x), basename )
ans
})
vjcitn/leeBamViews documentation built on Dec. 23, 2019, 7:37 p.m.
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setGeneric("totalReadCounts", function(x)standardGeneric("totalReadCounts"))
setMethod("totalReadCounts", "BamViews", function(x) {
tmp = lapply( bamPaths(x), scanBam, param=ScanBamParam(what="pos"))
ans = sapply(tmp, function(x) length(x[[1]][[1]]))
names(ans) = sapply( bamPaths(x), basename )
ans
})
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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