barplot_gene_ontology: make a gene ontology barplot over all variants
In vjcitn/oc2bioc: simple interfaces from OpenCRAVAT to Bioconductor
Description
Usage
Arguments
Value
Description
make a gene ontology barplot over all variants
Usage
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barplot_gene_ontology(
con,
kpev = c("EXP", "TAS", "IPI", "IDA", "IMP", "IGI"),
ont = c("MF", "BP"),
ncat = 15
)
Arguments
con
SQLite connection to openCRAVAT .sqlite
kpev
character() evidence codes to retain, defaulting to EXP, TAS, IPI, IDA, IMP, IGI
ont
character() ontology codes to retain, defaulting to MF and BP
ncat
numeric(1) maximum number of codes to report
Value
a ggplot instance
vjcitn/oc2bioc documentation built on Aug. 11, 2021, 1:04 p.m.
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Description Usage Arguments Value
Description
make a gene ontology barplot over all variants
Usage
1 2 3 4 5 6 | barplot_gene_ontology(
con,
kpev = c("EXP", "TAS", "IPI", "IDA", "IMP", "IGI"),
ont = c("MF", "BP"),
ncat = 15
)
|
Arguments
con |
SQLite connection to openCRAVAT .sqlite |
kpev |
character() evidence codes to retain, defaulting to EXP, TAS, IPI, IDA, IMP, IGI |
ont |
character() ontology codes to retain, defaulting to MF and BP |
ncat |
numeric(1) maximum number of codes to report |
Value
a ggplot instance
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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