barplot_gene_ontology: make a gene ontology barplot over all variants

In vjcitn/oc2bioc: simple interfaces from OpenCRAVAT to Bioconductor

make a gene ontology barplot over all variants

Description

make a gene ontology barplot over all variants

Usage

barplot_gene_ontology(
  con,
  kpev = c("EXP", "TAS", "IPI", "IDA", "IMP", "IGI"),
  ont = c("MF", "BP"),
  ncat = 15
)

Arguments

con	SQLite connection to openCRAVAT .sqlite
kpev	character() evidence codes to retain, defaulting to EXP, TAS, IPI, IDA, IMP, IGI
ont	character() ontology codes to retain, defaulting to MF and BP
ncat	numeric(1) maximum number of codes to report

Value

a ggplot instance

vjcitn/oc2bioc documentation built on Sept. 7, 2024, 10:23 a.m.