barplot_gene_ontology: make a gene ontology barplot over all variants

Description Usage Arguments Value

View source: R/use_sqlite.R

Description

make a gene ontology barplot over all variants

Usage

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barplot_gene_ontology(
  con,
  kpev = c("EXP", "TAS", "IPI", "IDA", "IMP", "IGI"),
  ont = c("MF", "BP"),
  ncat = 15
)

Arguments

con

SQLite connection to openCRAVAT .sqlite

kpev

character() evidence codes to retain, defaulting to EXP, TAS, IPI, IDA, IMP, IGI

ont

character() ontology codes to retain, defaulting to MF and BP

ncat

numeric(1) maximum number of codes to report

Value

a ggplot instance


vjcitn/oc2bioc documentation built on Jan. 31, 2021, 6:20 p.m.