make_oc_POSTable: convert a GRanges to a data.frame that can be written out as...
In vjcitn/oc2bioc: simple interfaces from OpenCRAVAT to Bioconductor
View source: R/make_postable.R
make_oc_POSTable R Documentation
convert a GRanges to a data.frame that can be written out as a POSTable file for OpenCRAVAT
Description
convert a GRanges to a data.frame that can be written out as a POSTable file for OpenCRAVAT
Usage
make_oc_POSTable(gr, chain = NULL, genome = NULL)
Arguments
gr
GRanges instance
chain
rtracklayer chain for liftOver
genome
character(1) genome tag
Examples
tf = tempfile()
mtb = make_oc_POSTable(gr38)
write.table(mtb, file=tf, sep="\t", col.names=FALSE, row.names=FALSE, quote=FALSE)
read.delim(tf, sep="\t", nrow=5, h=FALSE)
vjcitn/oc2bioc documentation built on Sept. 7, 2024, 10:23 a.m.
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View source: R/make_postable.R
| make_oc_POSTable | R Documentation |
convert a GRanges to a data.frame that can be written out as a POSTable file for OpenCRAVAT
Description
convert a GRanges to a data.frame that can be written out as a POSTable file for OpenCRAVAT
Usage
make_oc_POSTable(gr, chain = NULL, genome = NULL)
Arguments
gr |
GRanges instance |
chain |
rtracklayer chain for liftOver |
genome |
character(1) genome tag |
Examples
tf = tempfile()
mtb = make_oc_POSTable(gr38)
write.table(mtb, file=tf, sep="\t", col.names=FALSE, row.names=FALSE, quote=FALSE)
read.delim(tf, sep="\t", nrow=5, h=FALSE)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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