make_oc_POSTable: convert a GRanges to a data.frame that can be written out as...
In vjcitn/oc2bioc: simple interfaces from OpenCRAVAT to Bioconductor
Description
Usage
Arguments
Examples
View source: R/make_postable.R
Description
convert a GRanges to a data.frame that can be written out as a POSTable file for OpenCRAVAT
Usage
1
make_oc_POSTable(gr, chain = NULL, genome = NULL)
Arguments
gr
GRanges instance
chain
rtracklayer chain for liftOver
genome
character(1) genome tag
Examples
1
2
3
4
tf = tempfile()
mtb = make_oc_POSTable(gr38)
write.table(mtb, file=tf, sep="\t", col.names=FALSE, row.names=FALSE, quote=FALSE)
read.delim(tf, sep="\t", nrow=5, h=FALSE)
vjcitn/oc2bioc documentation built on Aug. 11, 2021, 1:04 p.m.
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Description Usage Arguments Examples
View source: R/make_postable.R
Description
convert a GRanges to a data.frame that can be written out as a POSTable file for OpenCRAVAT
Usage
1 | make_oc_POSTable(gr, chain = NULL, genome = NULL)
|
Arguments
gr |
GRanges instance |
chain |
rtracklayer chain for liftOver |
genome |
character(1) genome tag |
Examples
1 2 3 4 | tf = tempfile()
mtb = make_oc_POSTable(gr38)
write.table(mtb, file=tf, sep="\t", col.names=FALSE, row.names=FALSE, quote=FALSE)
read.delim(tf, sep="\t", nrow=5, h=FALSE)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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