Man pages for vjcitn/ogttMetrics
various metrics for oral glucose tolerance tests
| addAssay | add a matrix-valued assay to a MultiAssayExperiment instance |
| addHOMA | update an ogttCohort with HOMA as defined in... |
| addMatsuda120 | Compute Matsuda's index (120 minute form) for all samples |
| addMinmodSIs | update an ogttCohort with insulin sensitivity by minimal... |
| addQUICKI | update an ogttCohort with QUICKI as defined in... |
| concat | combine selected elements of a group of MultiAssayExperiments |
| csvImport | support for importing separate CSV with fat format: one... |
| dumpOc | an ad hoc tool for preparing individual files for analysis in... |
| fig3plot | plot analog of OMNICarb paper figure 3 |
| fig3tests | generate statistics for analog of OMNICarb paper figure 3 |
| fitOneMinMod | fit the dalla Man version of the Bergman minimal model... |
| getMinmodSIs | Obtain SI from fits for all participants in an OGTT... |
| minmodByID | Fit minimal model for a single subject |
| mvOutliers | get multivariate outlier indices separately for glucose and... |
| obaSamp | obaSamp: S4 container for baseline OGTT and related data |
| ogttCohort | an extension of MultiAssayExperiment including timing... |
| omnicBase_samp | omniccg_samp: S4 container sample of tests at baseline |
| omnicCG_samp | omnicCg_samp: S4 container sample of tests with diet Cg |
| plot2 | crude visualization developed prior to plot_OGTT_fit |
| plot_OGTT_fit | produce a 4-panel plot of aspects of the OGTT minimal model... |
| QCplots | simple quality assessments for OGTT series in a cohort |
| SIexplorer | interactive multipanel visualization for ogttCohort instance |
| SItests | SItests: cached set of pairwise contrasts for minimal... |
| xoverSamp | xoverSamp: S4 container multiple diet data sample |
