various metrics for oral glucose tolerance tests

addAssay | add a matrix-valued assay to a MultiAssayExperiment instance |

addHOMA | update an ogttCohort with HOMA as defined in... |

addMatsuda120 | Compute Matsuda's index (120 minute form) for all samples |

addMinmodSIs | update an ogttCohort with insulin sensitivity by minimal... |

addQUICKI | update an ogttCohort with QUICKI as defined in... |

concat | combine selected elements of a group of MultiAssayExperiments |

csvImport | support for importing separate CSV with fat format: one... |

dumpOc | an ad hoc tool for preparing individual files for analysis in... |

fig3plot | plot analog of OMNICarb paper figure 3 |

fig3tests | generate statistics for analog of OMNICarb paper figure 3 |

fitOneMinMod | fit the dalla Man version of the Bergman minimal model... |

getMinmodSIs | Obtain SI from fits for all participants in an OGTT... |

minmodByID | Fit minimal model for a single subject |

mvOutliers | get multivariate outlier indices separately for glucose and... |

obaSamp | obaSamp: S4 container for baseline OGTT and related data |

ogttCohort | an extension of MultiAssayExperiment including timing... |

omnicBase_samp | omniccg_samp: S4 container sample of tests at baseline |

omnicCG_samp | omnicCg_samp: S4 container sample of tests with diet Cg |

plot2 | crude visualization developed prior to plot_OGTT_fit |

plot_OGTT_fit | produce a 4-panel plot of aspects of the OGTT minimal model... |

QCplots | simple quality assessments for OGTT series in a cohort |

SIexplorer | interactive multipanel visualization for ogttCohort instance |

SItests | SItests: cached set of pairwise contrasts for minimal... |

xoverSamp | xoverSamp: S4 container multiple diet data sample |

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