a3 | alpha3 codes for countries |
Arima_by_county | county-level model |
Arima_by_state | Use Rob Hyndman's forecast package to estimate drift in ARIMA... |
Arima_contig_states | full incidence for contiguous states |
Arima_drop_state | fit ARIMA model to US data dropping one state |
Arima_drop_states | multistate exclusion prior to ARIMA |
Arima_nation | Use Rob Hyndman's forecast package to estimate drift in ARIMA... |
contig_states_dc | provide vector of contiguous US state names and DC |
contig_states_twolet | provide vector of contiguous US state names and DC, abbr |
country_metadata | Get basic country data |
cumulative_events_ejhu | constructor for covid_events |
cumulative_events_nyt_county | create cumulative_events instance for county in state data... |
cumulative_events_nyt_state | create cumulative_events instance for state data from NYT |
descartes_mobility_data | Get US daily mobility data from Descartes Labs |
dot-munge_data_from_jhu | simple function to munge JHU data into long-form tibble |
dot-munge_us_data_from_jhu | simple function to munge JHU US counties data into long-form... |
dot-remove_df_columns | utility function to remove columns that contain 'data.frame'... |
enriched_jhu_data | Get enriched jhu dataset enriched with country-level metadata |
est_Rt | produce an MCMC-based EpiEstim Rt estimate on the 29-day... |
event_tag | generalize type of event modeled |
form_incident_events | transform cumulative data to daily incidence |
grid_2d | a two-dimensional grid of integers |
integer_to_fips | convert an integer to fips |
jhu_data | Global COVID-19 data from JHU CSSEGIS |
jhu_data_to_excel | Create +/- write excel format of enriched JHU global data |
jhu_us_data | US counties COVID-19 data from JHU CSSEGIS |
min_bic | minimize BIC for ARIMA models with default differencing order... |
min_bic_2020_05_20 | a nationwide collection of best state-specific AR/MA model... |
min_bic_2020_06_12 | a nationwide collection of best state-specific AR/MA model... |
min_bic_2020_06_30 | a nationwide collection of best state-specific AR/MA model... |
min_bic_2020_07_06 | a nationwide collection of best state-specific AR/MA model... |
min_bic_2020_10_21 | a nationwide collection of best state-specific AR/MA model... |
min_bic_2020_11_22 | a nationwide collection of best state-specific AR/MA model... |
min_bic_2020_11_25 | a nationwide collection of best state-specific AR/MA model... |
min_bic_2020_12_28 | a nationwide collection of best state-specific AR/MA model... |
min_bic_2021_01_01 | a nationwide collection of best state-specific AR/MA model... |
min_bic_2021_03_21 | a nationwide collection of best state-specific AR/MA model... |
min_bic_2021_12_05 | a nationwide collection of best state-specific AR/MA model... |
min_bic_2022_01_01 | a nationwide collection of best state-specific AR/MA model... |
min_bic_all_states | organize search over contiguous states for optimal statewise... |
nytimes_county_data | United States county and state level data from the New York... |
plot.covid_events | plot for covid_events |
plot_sync | display synchronized death and confirmed case series |
plot_sync_mob | illustrate joint behavior of mobility data and COVID-19... |
print.bic_seq | report for optimal AR/MA search using BIC |
print.covid_events | print for a covid_events instance |
resync | shift the death records in dfr 'shift' days into the past |
run_ee | basic support, formerly completely hidden in inst, uses... |
run_meta | obtain input to rmeta meta.summaries, metaplot |
run_meta_county | county within state metaanalysis of incidence velocity |
s2p_get_cache | get the BiocFileCache for sars2pack |
si_cens_G | an EpiEstim-based, MCMC-derived SI sample, with Gamma basis |
syncapp | shiny app for appraisal of synchronization of death incidence... |
trim_between | trim part of series, generic |
trim_between.covid_events | focus on segment of series delimited by two dates |
trim_from | trim early part of series, generic |
trim_from.covid_events | trim early part of series |
tsapp | shiny app for appraisal of simple time-series models for... |
usa_facts_data | United States state and county level data from USAFacts |
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