runBasic: run igvR to plot SNP p-values over gene models

In vjcitn/tnt4dn8: TnT applications with GWAS in dn8 format

run igvR to plot SNP p-values over gene models

Description

run igvR to plot SNP p-values over gene models

Usage

runBasic(
  chr = "20",
  start = 60000,
  end = 1100000,
  dn8like,
  use = "mlog10p",
  posvbl = "pos_b38",
  pvbl = "p"
)

Arguments

chr	character(1)
start	numeric(1)
end	numeric(1)
dn8like	data.frame
use	character(1) defaults to "mlog10p"
posvbl	character(1) what column in dn8like table holds genomic position
pvbl	character(1) what column in dn8like table holds p-value

Examples

data("gtex_b38_lung_chr20_exc", package="tnt4dn8")
runBasic(dn8like=gtex_b38_lung_chr20_exc)

vjcitn/tnt4dn8 documentation built on Sept. 10, 2022, 11:17 a.m.