Files in vladimirsouza/lrRNA-seq_benchmark

Figure out how to call varaints from Iso-Seq data

R/create_master_table.R R/utils.R README.Rmd README.md documents/lrRNAseqBenchmark.pdf man/add_a_method_indel_information_to_master_table.Rd man/add_format_tag_from_vcf.Rd man/add_homopolymer_length_when_indels.Rd man/add_info_tag_from_vcf.Rd man/add_method_vs_truth_comparison_to_master_table.Rd man/add_number_of_n_cigar_reads_to_master_table.Rd man/add_qual_from_vcf.Rd man/add_read_coverage_from_bam_to_master_table.Rd man/add_some_read_statistic_from_bam_metacolumn.Rd man/add_splice_site_info_to_master_table.Rd man/add_the_ground_truth_indel_information_to_master_table.Rd man/add_two_method_comparison_to_master_table.Rd man/add_variant_density_of_a_method.Rd man/add_variant_type_to_master_table.Rd man/calc_accuracy_measures.Rd man/calculate_precision_recall_for_coverage_ranges.Rd man/calculate_precision_recall_for_multi_master_tables.Rd man/calculate_precision_recall_for_multi_master_tables2.Rd man/calculate_precision_recall_for_n_cigar_read_count_intervarls.Rd man/check_accuracy_per_coverage.Rd man/get_splice_sites_info.Rd man/get_splice_sites_info2.Rd man/gt_vt_method.Rd man/igv_batch_screenshots.Rd man/initiate_master_table.Rd man/is_indel_method.Rd man/make_homopolymer_plot.Rd man/make_homopolymer_table_to_plot.Rd man/method_homopolymer_indels.Rd man/precision_recall_curve_per_coverage.Rd man/splice_junction_analysis_table.Rd man/standardize_genotype.Rd