get_splice_sites_info: Get all splice sites positions of a BAM files

In vladimirsouza/lrRNA-seq_benchmark: Figure out how to call varaints from Iso-Seq data

Get all splice sites positions of a BAM files

Description

Get the position of all splice sites in a BAM file and the number of reads that support each one of them. Besides that, indicate whether the splice site is acceptor or donor site.

Usage

get_splice_sites_info(input_bam, threads)

Arguments

input_bam	The input BAM file to extract splice site positions from.
threads	Number of threads.

Details

This function may take several hours to run.

Value

A data.frame in which each row is a splice-site position.

vladimirsouza/lrRNA-seq_benchmark documentation built on March 25, 2023, 9:29 p.m.