igv_batch_screenshots: Generate igv batch screenshots script

In vladimirsouza/lrRNA-seq_benchmark: Figure out how to call varaints from Iso-Seq data

Generate igv batch screenshots script

Description

Generate igv batch screenshots script

Usage

igv_batch_screenshots(
  chrm,
  pos,
  output_dir,
  prefix,
  snapshot_path,
  windows_size = 1501,
  screenshot_number = 100,
  output_positions = FALSE
)

Arguments

chrm	A vector of string. Chromossome name, e.g. "chrm1".
pos	A vector of integers. Positions to center the screenshot.
output_dir	A 1-length string. Directory where the IGV-batch-screenshot script is saved.
prefix	A 1-length string.
snapshot_path	A 1-length string. Directory where the IGV-batch-screenshot script will save the screenshots.
windows_size	1-length integer. Window size of the screenshot.
screenshot_number	1-length integer. Number of screenshot to generate.
output_positions	If TRUE, output a data.frame with variant positions and the reagions to visualize.

vladimirsouza/lrRNA-seq_benchmark documentation built on March 25, 2023, 9:29 p.m.