API for vladpetyuk/PlexedPiper
Pipeline for isobaric quantification.
| Global functions | |
|---|---|
| assess_noninferable_proteins | Man page Source code |
| assess_redundant_protein_matches | Man page Source code |
| best_PTM_location_by_ascore | Man page Source code |
| best_PTM_location_by_ascore_old | Source code |
| collate_files | Source code |
| compute_num_peptides_per_1000aa | Man page Source code |
| convert_msgf_output_to_msnid | Source code |
| create_crosstab | Man page Source code |
| create_msnset | Man page Source code |
| filter_masic_data | Man page Source code |
| filter_msgf_data | Man page Source code |
| filter_msgf_data_missed_cleavages | Man page Source code |
| filter_msgf_data_peptide_level | Source code |
| filter_msgf_data_protein_level | Source code |
| get_AScore_results | Man page Source code |
| get_auth | Source code |
| get_dms_job_records | Man page Source code |
| get_driver | Source code |
| get_job_records_by_dataset_package | Man page Source code |
| get_output_folder_for_job_and_tool | Man page Source code |
| get_results_for_multiple_jobs | Man page Source code |
| get_results_for_multiple_jobs.dt | Man page Source code |
| get_results_for_single_job | Man page Source code |
| get_results_for_single_job.dt | Man page Source code |
| get_study_design_by_dataset_package | Man page Source code |
| get_tool_output_files_for_job_number | Man page Source code |
| is_PNNL_DMS_connection_successful | Man page Source code |
| link_msms_and_reporter_intensities | Source code |
| make_results_ratio_gl | Man page Source code |
| make_results_ratio_ph | Man page Source code |
| make_rii_peptide_gl | Man page Source code |
| make_rii_peptide_ph | Man page Source code |
| motrpac_bic_output | Man page |
| path_to_FASTA_used_by_DMS | Man page Source code |
| pnnl_dms_utils | Man page |
| read_AScore_results | Man page Source code |
| read_masic_data | Man page Source code |
| read_masic_data_from_DMS | Man page Source code |
| read_msgf_data | Man page Source code |
| read_msms_data_from_DMS | Man page Source code |
| read_study_design | Man page Source code |
| read_study_design_from_DMS | Source code |
| read_with_name | Source code |
| remap_accessions | Man page |
| remap_accessions_fasta | Man page |
| remap_accessions_refseq_to_gene | Man page Source code |
| remap_accessions_refseq_to_gene_fasta | Man page Source code |
| remap_accessions_uniprot_to_gene | Man page Source code |
| remap_accessions_uniprot_to_gene_fasta | Source code |
| reporter_converter | Man page |
