Files in vladpetyuk/PlexedPiper
Pipeline for isobaric quantification.
.gitignore
DESCRIPTION
NAMESPACE
R/PNNL_DMS_utils.R
R/accession_converter.R
R/add_ascore.R
R/compute_accession_coverage.R
R/create_crosstab.R
R/create_msnset.R
R/data.R
R/filter_masic_data.R
R/filter_msgf_data.R
R/filter_msgf_data_missed_cleavages.R
R/motrpac_bic_funtions.R
R/read_AScore_results.R
R/read_helpers.R
R/read_masic_data.R
R/read_masic_data_from_DMS.R
R/read_msgf_data.R
R/read_msgf_data_from_DMS.R
R/read_study_design.R
R/remap_fasta.R
R/z_dms_read_msgf_data.R
README.md
TODO
data/reporter_converter.RData
inst/extdata/reporter_converter_tmt10.txt
inst/extdata/reporter_converter_tmt11.txt
man/best_PTM_location_by_ascore.Rd
man/compute_num_peptides_per_1000aa.Rd
man/create_crosstab.Rd
man/create_msnset.Rd
man/filter_masic_data.Rd
man/filter_msgf_data.Rd
man/filter_msgf_data_missed_cleavages.Rd
man/motrpac_bic_output.Rd
man/pnnl_dms_utils.Rd
man/read_AScore_results.Rd
man/read_masic_data.Rd
man/read_masic_data_from_DMS.Rd
man/read_msgf_data.Rd
man/read_msms_data_from_DMS.Rd
man/read_study_design.Rd
man/remap_accessions.Rd
man/remap_accessions_refseq_to_gene_fasta.Rd
man/reporter_converter.Rd
vignettes/tmt_pipeline_for_PNNL_DMS_phos.R
vignettes/tmt_pipeline_for_PNNL_DMS_phos.Rmd
vignettes/tmt_pipeline_for_PNNL_DMS_phos.html
vignettes/tmt_pipeline_for_PNNL_DMS_phos_MoTrPAC.Rmd
vignettes/tmt_pipeline_for_PNNL_DMS_phos_MoTrPAC.html
vignettes/tmt_pipeline_for_PNNL_DMS_phos_pep_MoTrPAC.Rmd
vignettes/tmt_pipeline_for_PNNL_DMS_phos_pep_MoTrPAC.html
vignettes/tmt_pipeline_v1.R
vignettes/tmt_pipeline_v1.Rmd
vignettes/tmt_pipeline_v1.html
vignettes/tmt_pipeline_v1_PNNL_DMS.R
vignettes/tmt_pipeline_v1_PNNL_DMS.Rmd
vignettes/tmt_pipeline_v1_PNNL_DMS.html
