Man pages for vladpetyuk/PlexedPiper
Pipeline for isobaric quantification.
| best_PTM_location_by_ascore | Remap Sequence IDs in FASTA File |
| compute_num_peptides_per_1000aa | Computing number of peptides per 1000 aa |
| create_crosstab | Makes Cross-Tab With Quantitative Data. |
| create_msnset | Makes MSnSet from Quantitative Crosstab. |
| filter_masic_data | Filtering MASIC Data |
| filter_msgf_data | Filtering MSGF Data |
| filter_msgf_data_missed_cleavages | Filtering MSGF Data |
| motrpac_bic_output | Format Tables for BIC |
| pnnl_dms_utils | Utilities for interacting with PNNL DMS |
| read_AScore_results | Read AScore results from folder |
| read_masic_data | Reading MASIC Results. Generic. |
| read_masic_data_from_DMS | Reading MASIC results from PNNL's DMS |
| read_msgf_data | Reading MSGF Results. Generic. |
| read_msms_data_from_DMS | Reading MSGF output from PNNL's DMS |
| read_study_design | Utilities for reading study design files. |
| remap_accessions | Remap accessions |
| remap_accessions_refseq_to_gene_fasta | Remap Sequence IDs in FASTA File |
| reporter_converter | Converter for TMT Reporter Channels |
