data-raw/phylogeneticTree.R
In vobencha/curatedMetagenomicData: Curated Metagenomic Data of the Human Microbiome
phylogenetic_tree_file <-
base::as.character("https://zenodo.org/record/5668382/files/mpa_v30_CHOCOPhlAn_201901_species_tree.nwk")
phylogenetic_tree_path <-
base::tempfile()
utils::download.file(url = phylogenetic_tree_file, destfile = phylogenetic_tree_path)
phylogeneticTree <-
ape::read.tree(phylogenetic_tree_path)
phylogeneticTree[["tip.label"]] <-
stringr::str_remove_all(phylogeneticTree[["tip.label"]], "GCA_[0-9]+\\|")
vobencha/curatedMetagenomicData documentation built on Oct. 26, 2023, 5:34 a.m.
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phylogenetic_tree_file <-
base::as.character("https://zenodo.org/record/5668382/files/mpa_v30_CHOCOPhlAn_201901_species_tree.nwk")
phylogenetic_tree_path <-
base::tempfile()
utils::download.file(url = phylogenetic_tree_file, destfile = phylogenetic_tree_path)
phylogeneticTree <-
ape::read.tree(phylogenetic_tree_path)
phylogeneticTree[["tip.label"]] <-
stringr::str_remove_all(phylogeneticTree[["tip.label"]], "GCA_[0-9]+\\|")
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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