Files in vodkatad/roar
Identify differential APA usage from RNA-seq alignments
DESCRIPTION
NAMESPACE
R/AllClasses.R
R/AllGenerics.R
R/Roar-utils.R
R/RoarDataset-accessors.R
R/RoarDatasetMultipleAPA-accessors.R
inst/NEWS
inst/examples/apa.gtf
inst/examples/roarWrapper.R
inst/examples/roarWrapper_chrBychr.R
inst/examples/roarWrapper_multipleAPA.R
inst/examples/roarWrapper_multipleAPA_bf.R
inst/examples/roarWrapper_multipleAPA_chrBychr.R
inst/examples/roarWrapper_paired_chrBychr.R
man/RoarDataset-class.Rd
man/RoarDataset-constructor.Rd
man/RoarDatasetFromFiles-constructor.Rd
man/RoarDatasetMultipleAPA-class.Rd
man/RoarDatasetMultipleAPA-constructor.Rd
man/RoarDatasetMultipleAPAFromFiles-constructor.Rd
man/checkStep-method.Rd
man/combineFisherMethod-method.Rd
man/computePairedPvals-method.Rd
man/computePvals-method.Rd
man/computeRoars-method.Rd
man/cores-method.Rd
man/countPrePost-method.Rd
man/countResults-method.Rd
man/fpkmResults-method.Rd
man/getFisher-method.Rd
man/meanAcrossAssays-method.Rd
man/pvalueCorrectFilter-method.Rd
man/pvalueFilter-method.Rd
man/roar-package.Rd
man/standardFilter-method.Rd
man/totalResults-method.Rd
tests/testthat.R
tests/testthat/test_roar.R
tests/testthat/test_roar_multipleAPA.R
tests/testthat/test_roar_results.R
vignettes/prepost.pdf
vignettes/roar.Rnw
vignettes/roar.bib
