Man pages for vodkatad/roar
Identify differential APA usage from RNA-seq alignments

checkStep-methodPrivate/inner/helper method to check the order of the invoked...
combineFisherMethod-methodPrivate/inner/helper method to combine pvalues of independent...
computePairedPvals-methodComputes pvalues (Fisher test) on the read counts in this...
computePvals-methodComputes pvalues (Fisher test) on the read counts in this...
computeRoars-methodComputes m/M and roar values
cores-methodMethod to check how many cores are used by a roar analysis -...
countPrePost-methodCounts reads falling over PRE/POST portions of the given...
countResults-methodReturns a dataframe with results of the analysis for a...
fpkmResults-methodReturns a dataframe with results of the analysis for a...
getFisher-methodPrivate/inner/helper method to perform Fisher test
meanAcrossAssays-methodPrivate/inner/helper method to get average counts across...
pvalueCorrectFilter-methodReturns a dataframe with results of the analysis for a...
pvalueFilter-methodReturns a dataframe with results of the analysis for a...
RoarDataset-classClass '"RoarDataset"'
RoarDataset-constructorCreates a 'RoarDataset' object
RoarDatasetFromFiles-constructorCreates a 'RoarDataset' object
RoarDatasetMultipleAPA-classClass '"RoarDatasetMultipleAPA"'
RoarDatasetMultipleAPA-constructorCreates a 'RoarDatasetMultipleAPA' object
RoarDatasetMultipleAPAFromFiles-constructorCreates a 'RoarDatasetMultipleAPA' object
roar-packageIdentify differential APA usage from RNA-seq alignments
standardFilter-methodReturns a dataframe with results of the analysis for a...
totalResults-methodReturns a dataframe with results of the analysis for a...
vodkatad/roar documentation built on May 27, 2017, 9:57 p.m.