Man pages for vodkatad/roar
Identify differential APA usage from RNA-seq alignments
| checkStep-method | Private/inner/helper method to check the order of the invoked... |
| combineFisherMethod-method | Private/inner/helper method to combine pvalues of independent... |
| computePairedPvals-method | Computes pvalues (Fisher test) on the read counts in this... |
| computePvals-method | Computes pvalues (Fisher test) on the read counts in this... |
| computeRoars-method | Computes m/M and roar values |
| cores-method | Method to check how many cores are used by a roar analysis -... |
| countPrePost-method | Counts reads falling over PRE/POST portions of the given... |
| countResults-method | Returns a dataframe with results of the analysis for a... |
| fpkmResults-method | Returns a dataframe with results of the analysis for a... |
| getFisher-method | Private/inner/helper method to perform Fisher test |
| meanAcrossAssays-method | Private/inner/helper method to get average counts across... |
| pvalueCorrectFilter-method | Returns a dataframe with results of the analysis for a... |
| pvalueFilter-method | Returns a dataframe with results of the analysis for a... |
| RoarDataset-class | Class '"RoarDataset"' |
| RoarDataset-constructor | Creates a 'RoarDataset' object |
| RoarDatasetFromFiles-constructor | Creates a 'RoarDataset' object |
| RoarDatasetMultipleAPA-class | Class '"RoarDatasetMultipleAPA"' |
| RoarDatasetMultipleAPA-constructor | Creates a 'RoarDatasetMultipleAPA' object |
| RoarDatasetMultipleAPAFromFiles-constructor | Creates a 'RoarDatasetMultipleAPA' object |
| roar-package | Identify differential APA usage from RNA-seq alignments |
| standardFilter-method | Returns a dataframe with results of the analysis for a... |
| totalResults-method | Returns a dataframe with results of the analysis for a... |
