View source: R/panev.pathList.R
panev.pathList | R Documentation |
The function retrieves the list of the available pathways in KEGG, according to a user defined search string. If path = NULL the list of all available pathways is returned. To run all core PANEV functions a list of pathways of interest, coded with KEGG 'path_ID', is required.
panev.pathList(string = NULL)
string |
A string used to search within the description field of all KEGG available pathways (default = NULL). |
This function is based on the keggList
function of KEGGREST package (http://bioconductor.org/packages/release/bioc/html/KEGGREST.html.
A dataframe containing two columns with KEGG path description and path ID respectively.
Valentino Palombo (valentino.palombo@gmail.com)
Tenenbaum D (2017). KEGGREST: Client-side REST access to KEGG. R package version 1.16.1.
##### EXAMPLES CODE ##### #Create a list of all available pathways for PANEV list <- panev.pathList(string = NULL) #Look for a specific pathway(s) in PANEV, matching your search string list <- panev.pathList(string = "lipid")
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