panev.speciesCode: PANEV species codes

In vpalombo/PANEV: PaNeV: an R package for a pathway-based network visualization

PANEV species codes

Description

Get the list of species available for panev. The correct 'panev code' is mandatory for run correctly the main PANEV functions.

Usage

panev.speciesCode(string = NULL)

Arguments

string

A string used to search the organism code within the full list. (default = NULL).

Details

This function is based on the keggList function of KEGGREST package (http://bioconductor.org/packages/release/bioc/html/KEGGREST.html.

Value

A dataframe containing two columns named 'species' and 'panev code', respectively.

Author(s)

Valentino Palombo ([e-mail])

References

Tenenbaum D (2017). KEGGREST: Client-side REST access to KEGG. R package version 1.16.1.

Examples

##### EXAMPLES CODE #####
#Create a list of all available species for PANEV
list <- panev.speciesCode()

#Look for a specific species in PANEV, matching a search string
list <- panev.speciesCode(string="bos")

vpalombo/PANEV documentation built on June 13, 2022, 1:11 p.m.