cdsretrieve: Retrieve annotation results from CD-SEARCH.

In vragh/seqvisr: Biological Sequence Visualization and Auxiliary Functions in R

Retrieve annotation results from CD-SEARCH.

Description

cdsearchr() internal function that retrieves the (HTML-formatted) tabular data containing the annotations for a given cdsid (@seealso cdssubmit()). All parameters are inherited from cdsearchr().

Usage

cdsretrieve(cdsid, tdata, qdefl, cddefl, dmode, cdsurl)

Arguments

cdsid	(character string, mandatory) the cdsid returned by the NCBI CD-SEARCH server upon successful submission of a search request.
tdata	(character string, mandatory) the format in which the target data should be retrieved.
qdefl	(binary, optional) should query titles be included in the results? (Set to TRUE by default.)
cddefl	(binary, optional) should domain titles be included in the results? (Set to FALSE by default.)
dmode	(character string, optional) which data mode must be used for the results.
cdsurl	(character string, mandatory) URL at which the CD-SEARCH server can be accessed.

Value

A httr response object containing a (HTML-formatted) text table of annotation results from CD-SEARCH.

vragh/seqvisr documentation built on April 20, 2024, 10:06 a.m.