Files in vtorda/CompareTools

Post processing of COMPARE analysis

R/CorComp2.R R/CutDendroComp.R R/DolloImport3.R R/GetNodes.R R/GroupComp.R R/HclustComp.R R/LadderizeTree.R R/PlotCopyNum.R R/PlotEvents.R R/RandomAovTest.R R/SliceComp.R R/TransformComp.R R/fungi_tree.R R/fungi_tree_lad.R R/retrieve_event3.R README.md benchmark/CompareTools_Demo1.Rmd benchmark/Dollo_import_benchmark2019.R benchmark/Dolloimport_20180919.Rmd benchmark/HuLifescience_poster.Rmd benchmark/PlotEvents_2019.Rmd benchmark/aov_test.R benchmark/boxplot1.pdf benchmark/boxplot2.pdf benchmark/boxplot3.pdf benchmark/boxplot4.pdf benchmark/cluster_plot.R benchmark/dendro_1.pdf benchmark/dendro_2.pdf benchmark/dendro_3.pdf benchmark/groups_all_1.pdf benchmark/sum_all_1.pdf benchmark/sum_all_10.pdf benchmark/sum_all_11.pdf benchmark/sum_all_12.pdf benchmark/sum_all_13.pdf benchmark/sum_all_14.pdf benchmark/sum_all_15.pdf benchmark/sum_all_16.pdf benchmark/sum_all_17.pdf benchmark/sum_all_18.pdf benchmark/sum_all_19.pdf benchmark/sum_all_2.pdf benchmark/sum_all_20.pdf benchmark/sum_all_21.pdf benchmark/sum_all_22.pdf benchmark/sum_all_23.pdf benchmark/sum_all_24.pdf benchmark/sum_all_25.pdf benchmark/sum_all_26.pdf benchmark/sum_all_27.pdf benchmark/sum_all_28.pdf benchmark/sum_all_29.pdf benchmark/sum_all_3.pdf benchmark/sum_all_30.pdf benchmark/sum_all_31.pdf benchmark/sum_all_32.pdf benchmark/sum_all_4.pdf benchmark/sum_all_5.pdf benchmark/sum_all_6.pdf benchmark/sum_all_7.pdf benchmark/sum_all_8.pdf benchmark/sum_all_9.pdf inst/extdata/simulate_data.Rmd inst/extdata/transform_dolloout.R man/CorComp.Rd man/CutDendroComp.Rd man/DolloImport3.Rd man/GetNodes.Rd man/GroupComp.Rd man/HclustComp.Rd man/LadderizeTree.Rd man/PlotEvent.Rd man/RandomAovTest.Rd man/SliceComp.Rd man/TransformComp.Rd man/fungi_tree.Rd man/fungi_tree_lad.Rd man/retrieve_event3.Rd tests/testthat.R tests/testthat/test_LadderizeTree.R