DolloImport3: DolloImport3
In vtorda/CompareTools: Post processing of COMPARE analysis
Description
Usage
Arguments
Value
Description
Import data from compare analysis
Usage
1
DolloImport3(tree, files = NULL)
Arguments
tree
a phylo object describing the species tree used in the COMPARE analysis
files
a character containing the path with the name of the the output file from the step Dollo parsimony of the COMPARE analysis.
part_name
Value
this function returns a list object with the following elements: tree,
Compare matrices and raw_data. raw data is a matrix with two columns (1 = gains, 2 = losses)
and as many rows as many nodes + tips the species tree has. The rows and tree nodes are ligned so the first rows are the tips in order followed by the innernodes
vtorda/CompareTools documentation built on Nov. 6, 2019, 9:07 p.m.
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Description Usage Arguments Value
Description
Import data from compare analysis
Usage
1 | DolloImport3(tree, files = NULL)
|
Arguments
tree |
a phylo object describing the species tree used in the COMPARE analysis |
files |
a character containing the path with the name of the the output file from the step Dollo parsimony of the COMPARE analysis. |
part_name |
Value
this function returns a list object with the following elements: tree,
Compare matrices and raw_data. raw data is a matrix with two columns (1 = gains, 2 = losses)
and as many rows as many nodes + tips the species tree has. The rows and tree nodes are ligned so the first rows are the tips in order followed by the innernodes
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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