rPacificCod: Functions related to the Pacific cod IBM

Description Usage Arguments Details Value See Also

Function to calculate growth (J/g fish/d) by weight and temperature.

1	juv_BioEnGrowth(W, T, DSa = 0.125, Fa = 0.15, Ua = 0.11, EDp = 4113)

`W`	- weight(s) of individual fish
`T`	- temperature(s)
`DSa`	- fraction of assimilated energy lost to specific dynamic action
`Fa`	- fraction of consumed energy lost to egestion
`Ua`	- fraction of assimilated energy lost to execretion
`EDp`	- energy denisty of prey (J/g prey)

Based on eq.s S1, S2, and S3 in Supplement to Hurst et al. 2018 as corrected by those in Cianelli et al, 1998:

G(W,T) = C(W,T) - [R(W,T) + F(W,T) + U(W,T)] , growth [J/g fish/d]
C(W,T) = C(W,EDp)*fC(T) , consumption [J/g fish/d]
R(W,T) = Ra(W,T) + SDA(W,T) , total respiration [J/g fish/d]
Ra(W,T) = R(W)*fR(T) , non-SDA respiration
F(W,T) = Fa*C , egestion [J/g fish/d]
U(W,T) = Ua*(C-F) , excretion [J/g fish/d]
SDA = DSa*(C-F) , specific dynamic action [J/g fish/d]

dataframe with columns W (weight), T (temperature), G (growth rate), C (consumption rate), R (total respiration rate), F (egestion rate), U (excretion rate), Ra (non-SDA repsiration rate), and SDA (specific dynamic action rate).

Other juvenile bioenergetic functions: juvBioenergetics_CompareRelationships(), juvBioenergetics_PlotRelationships(), juv_CT(), juv_Ca(), juv_GT(), juv_MT(), juv_Ra(), juv_fC(), juv_fR()