sf_CalcTdepGrowthRatesFromROMS: Get a pkgsf dataframe with spatially-explicit...
In wStockhausen/rPacificCod: Functions related to the Pacific cod IBM

Description Usage Arguments Details Value

View source: R/sf_CalcTdepGrowthRatesFromROMS.R

Function to get a pkgsf dataframe with spatially-explicit temperature-dependent growth rates from ROMS model output.

sf_CalcTdepGrowthRatesFromROMS(
  rateFcn = postflexionLarvae_GrowthRate_WW,
  roms_grid = wtsROMS::getGrid("CGOA"),
  roms_mo = "~/Work/Projects/ROMS/CGOA/cgoa_avg_0005.nc",
  timeslice = 1,
  vertical_layer = 1,
  crs = NULL
)

`rateFcn`	- temperature-dependent rate function to use
`roms_grid`	- sf dataframe representing a ROMS grid object
`roms_mo`	- sf dataframe representing a ROMS model object, or path to a ROMS model netcdf file
`timeslice`	- time slice to extract (if roms_mo is a file path)
`vertical_layer`	- vertical layer to extract (if roms_mo is a file path)
`crs`	- sf-style coordinate reference system object, or NULL (default)

Output dataframe will be in the coordinate reference system of the ROMS model grid unless the input crs was not NULL (the default).

@note This function can also calculate spatially-explicit egg hatch success if egg_HatchSuccess is given as the rateFcn. The "growth_rate" column of the resulting sf dataframe will contain the hatch success information.

sf dataframe with spataly-explicit temperature-dependent growth rates

wStockhausen/rPacificCod documentation built on March 25, 2021, 2:39 p.m.