Files in wadpac/GGIR
Raw Accelerometer Data Analysis

.Rbuildignore
.github/ISSUE_TEMPLATE/bug_report.md .github/ISSUE_TEMPLATE/feature_request.md
.github/lock.yml
.github/pull_request_template.md
.github/workflows/r.yml
.github/workflows/r_basic_check.yml
.github/workflows/r_codecov.yml
.gitignore
.zenodo.json
CODE_OF_CONDUCT.md CONTRIBUTING.md
DESCRIPTION
LICENSE
NAMESPACE
NEWS.md R/ABI.R R/CalcSleepRegularityIndex.R R/DFA.R R/GGIR.R R/HASIB.R R/HASPT.R R/MXLX.R R/POSIXtime2iso8601.R R/SSP.R R/ShellDoc2Vignette.R R/aggregateEvent.R R/appendRecords.R R/applyExtFunction.R R/apply_cosinor_IS_IV_Analyses.R R/checkMilestoneFolders.R R/check_log.R R/check_myfun.R R/check_params.R R/convertEpochData.R R/correctOlderMilestoneData.R R/cosinor_IS_IV_Analyses.R R/createConfigFile.R R/create_test_acc_csv.R R/create_test_sleeplog_csv.R R/datadir2fnames.R R/detectEventBouts.R R/detect_nonwear_clipping.R R/extractID.R R/extract_params.R R/filterNonwearNight.R R/g.IVIS.R R/g.abr.day.names.R R/g.analyse.R R/g.analyse.avday.R R/g.analyse.perday.R R/g.analyse.perfile.R R/g.applymetrics.R R/g.calibrate.R R/g.conv.actlog.R R/g.convert.part2.long.R R/g.create.sp.mat.R R/g.detecmidnight.R R/g.dotorcomma.R R/g.extractheadervars.R R/g.fragmentation.R R/g.getM5L5.R R/g.getbout.R R/g.getmeta.R R/g.getstarttime.R R/g.impute.R R/g.imputeTimegaps.R R/g.inspectfile.R R/g.intensitygradient.R R/g.loadlog.R R/g.part1.R R/g.part2.R R/g.part3.R R/g.part4.R R/g.part4_extractid.R R/g.part5.R R/g.part5.addfirstwake.R R/g.part5.addsib.R R/g.part5.analyseRest.R R/g.part5.classifyNaps.R R/g.part5.definedays.R R/g.part5.fixmissingnight.R R/g.part5.handle_lux_extremes.R R/g.part5.lux_persegment.R R/g.part5.onsetwaketiming.R R/g.part5.savetimeseries.R R/g.part5.wakesleepwindows.R R/g.part5_analyseSegment.R R/g.part5_initialise_ts.R R/g.part6.R R/g.plot.R R/g.plot5.R R/g.readaccfile.R R/g.readtemp_movisens.R R/g.report.part2.R R/g.report.part4.R R/g.report.part5.R R/g.report.part5_dictionary.R R/g.report.part6.R R/g.shell.GGIR.R R/g.sib.det.R R/g.sib.plot.R R/g.sib.sum.R R/g.sibreport.R R/g.weardec.R R/get_nw_clip_block_params.R R/get_starttime_weekday_truncdata.R R/getfolderstructure.R R/identify_level.R R/is.ISO8601.R R/is_this_a_dst_night.R R/isfilelist.R R/ismovisens.R R/iso8601chartime2POSIX.R R/load_params.R R/monitor_types.R R/parametersVignette.R R/part6AlignIndividuals.R R/part6PairwiseAggregation.R R/read.myacc.csv.R
R/sysdata.rda
R/tidyup_df.R R/updateBlocksize.R R/visualReport.R R/zzz.R README.md RELEASE_CYCLE.md
_pkgdown.yml
codecov.yml
data/data.calibrate.RData
data/data.getmeta.RData
data/data.inspectfile.RData
data/data.metalong.RData
data/data.ts.RData
dev-functions/createInternalData.R dev-functions/prepareNewRelease.R
docs/404.html
docs/CODE_OF_CONDUCT.html
docs/CONTRIBUTING.html
docs/LICENSE-text.html
docs/RELEASE_CYCLE.html
docs/articles/Cookbook.html
docs/articles/CutPoints.html
docs/articles/ExternalFunction.html
docs/articles/GGIR-MASTERLOGO-RGB.png
docs/articles/GGIR.html
docs/articles/GGIRParameters.html
docs/articles/GGIRoutput.html
docs/articles/HouseHoldCoanalysis.html
docs/articles/TutorialDaySegmentAnalyses.html
docs/articles/chapter0_Contributing.html
docs/articles/chapter0_GetStarted.html
docs/articles/chapter0_Installation.html
docs/articles/chapter0_Support.html
docs/articles/chapter10_SleepAnalysis.html
docs/articles/chapter11_DescribingDataCutPoints.html
docs/articles/chapter12_TimeUseAnalysis.html
docs/articles/chapter13_CircadianRhythm.html
docs/articles/chapter14_BehaviouralFragmentation.html
docs/articles/chapter1_WhatIsGGIR.html
docs/articles/chapter2_Pipeline.html
docs/articles/chapter3_QualityAssessment.html
docs/articles/chapter4_AccMetrics.html
docs/articles/chapter5_StudyProtocol.html
docs/articles/chapter6_DataImputation.html
docs/articles/chapter7_DescribingDataWithoutKnowingSleep.html
docs/articles/chapter8_SleepFundamentalsSibs.html
docs/articles/chapter9_SleepFundamentalsGuiders.html
docs/articles/chapterInProgress.html
docs/articles/example_dovisual.jpg
docs/articles/index.html
docs/articles/nonwearimage.jpg
docs/articles/readmyacccsv.html
docs/articles/reportexample.jpg
docs/authors.html
docs/deps/bootstrap-5.3.1/bootstrap.bundle.min.js
docs/deps/bootstrap-5.3.1/bootstrap.bundle.min.js.map
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docs/deps/font-awesome-6.5.2/css/all.css
docs/deps/font-awesome-6.5.2/css/all.min.css
docs/deps/font-awesome-6.5.2/css/v4-shims.css
docs/deps/font-awesome-6.5.2/css/v4-shims.min.css
docs/deps/font-awesome-6.5.2/webfonts/fa-brands-400.ttf
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docs/deps/font-awesome-6.5.2/webfonts/fa-regular-400.woff2
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docs/deps/font-awesome-6.5.2/webfonts/fa-v4compatibility.ttf
docs/deps/font-awesome-6.5.2/webfonts/fa-v4compatibility.woff2
docs/deps/headroom-0.11.0/headroom.min.js
docs/deps/headroom-0.11.0/jQuery.headroom.min.js
docs/deps/jquery-3.6.0/jquery-3.6.0.js
docs/deps/jquery-3.6.0/jquery-3.6.0.min.js
docs/deps/jquery-3.6.0/jquery-3.6.0.min.map
docs/deps/search-1.0.0/autocomplete.jquery.min.js
docs/deps/search-1.0.0/fuse.min.js
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docs/index.html
docs/katex-auto.js
docs/lightswitch.js
docs/link.svg
docs/news/index.html
docs/pkgdown.js
docs/pkgdown.yml
docs/reference/GGIR-package-1.png
docs/reference/Rplot001.png
docs/reference/g.plot-1.png
docs/search.json
docs/sitemap.xml
index.md
inst/CITATION
inst/testfiles/ActiGraph13.csv
inst/testfiles/ActiGraph13_timestamps_headers.csv
inst/testfiles/ActiGraph61.csv
inst/testfiles/Actiwatch.AWD
inst/testfiles/Actiwatch.csv
inst/testfiles/actigraph_testfile.gt3x
inst/testfiles/ax3_testfile_unix_timestamps.csv
inst/testfiles/ax6_testfile_formatted_timestamps.csv
inst/testfiles/sensewear.xls
inst/testfiles/ukbiobank.csv
man/ABI.Rd man/CalcSleepRegularityIndex.Rd man/DFA.Rd man/GGIR-package.Rd man/GGIR.Rd man/HASIB.Rd man/HASPT.Rd man/MXLX.Rd man/POSIXtime2iso8601.Rd man/SSP.Rd man/ShellDoc2Vignette.Rd man/aggregateEvent.Rd man/appendRecords.Rd man/applyExtFunction.Rd man/apply_cosinor_IS_IV_Analyses.Rd man/checkMilestoneFolders.Rd man/check_log.Rd man/check_myfun.Rd man/check_params.Rd man/convertEpochData.Rd man/correctOlderMilestoneData.Rd man/cosinor_IS_IV_Analyses.Rd man/createConfigFile.Rd man/create_test_acc_csv.Rd man/create_test_sleeplog_csv.Rd man/data.calibrate.Rd man/data.getmeta.Rd man/data.inspectfile.Rd man/data.metalong.Rd man/data.ts.Rd man/datadir2fnames.Rd man/detect_nonwear_clipping.Rd man/extractID.Rd man/extract_params.Rd man/filterNonwearNight.Rd man/g.IVIS.Rd man/g.abr.day.names.Rd man/g.analyse.Rd man/g.analyse.avday.Rd man/g.analyse.perday.Rd man/g.analyse.perfile.Rd man/g.applymetrics.Rd man/g.calibrate.Rd man/g.conv.actlog.Rd man/g.convert.part2.long.Rd man/g.create.sp.mat.Rd man/g.detecmidnight.Rd man/g.dotorcomma.Rd man/g.extractheadervars.Rd man/g.fragmentation.Rd man/g.getM5L5.Rd man/g.getbout.Rd man/g.getmeta.Rd man/g.getstarttime.Rd man/g.impute.Rd man/g.imputeTimegaps.Rd man/g.inspectfile.Rd man/g.intensitygradient.Rd man/g.loadlog.Rd man/g.part1.Rd man/g.part2.Rd man/g.part3.Rd man/g.part4.Rd man/g.part4_extradctid.Rd man/g.part5.Rd man/g.part5.addfirstwake.Rd man/g.part5.addsib.Rd man/g.part5.analyseRest.Rd man/g.part5.classifyNaps.Rd man/g.part5.definedays.Rd man/g.part5.fixmissingnight.Rd man/g.part5.handle_lux_extremes.Rd man/g.part5.lux_persegment.Rd man/g.part5.ontsetwaketiming.Rd man/g.part5.savetimeseries.Rd man/g.part5.wakesleepwindows.Rd man/g.part5_analyseSegment.Rd man/g.part5_initialise_ts.Rd man/g.part6.Rd man/g.plot.Rd man/g.plot5.Rd man/g.readaccfile.Rd man/g.readtemp_movisens.Rd man/g.report.part2.Rd man/g.report.part4.Rd man/g.report.part5.Rd man/g.report.part5_dictionary.Rd man/g.report.part6.Rd man/g.shell.GGIR.Rd man/g.sib.det.Rd man/g.sib.plot.Rd man/g.sib.sum.Rd man/g.sibreport.Rd man/g.weardec.Rd man/get_nw_clip_block_params.Rd man/get_starttime_weekday_truncdata.Rd man/getfolderstructure.Rd man/identify_levels.Rd man/is.ISO8601.Rd man/is_this_a_dst_night.Rd man/isfilelist.Rd man/ismovisens.Rd man/iso8601chartime2POSIX.Rd man/load_params.Rd man/parametersVignette.Rd man/part6AlignIndividuals.Rd man/part6PairwiseAggregation.Rd man/read.myacc.csv.Rd man/tidyup_df.Rd man/updateBlocksize.Rd man/visualReport.Rd tests/testthat.R tests/testthat/test_CalcSleepRegularityIndex.R tests/testthat/test_HASIB.R tests/testthat/test_MXLX.R tests/testthat/test_POSIX.R tests/testthat/test_ShellDoc2Vignette.R tests/testthat/test_StudyDatesFile.R tests/testthat/test_aggregateEvent.R tests/testthat/test_appendRecords.R tests/testthat/test_applyExtFunction.R tests/testthat/test_chainof5parts.R tests/testthat/test_checkMilestoneFolders.R tests/testthat/test_convert.part2.long.R tests/testthat/test_convertExtEpochData.R tests/testthat/test_correctOlderMilestoneData.R tests/testthat/test_cosinor.R tests/testthat/test_create_test_acc_csv.R tests/testthat/test_create_test_sleeplog_csv.R tests/testthat/test_detectEventBouts.R tests/testthat/test_detect_nonwear.R tests/testthat/test_dfa.R tests/testthat/test_extractID.R tests/testthat/test_fragmentation.R tests/testthat/test_g.IVIS.R tests/testthat/test_g.impute.R tests/testthat/test_g.intensitygradient.R tests/testthat/test_g_conv_actlog.R tests/testthat/test_getfolderstructure.R tests/testthat/test_ggetbout.R tests/testthat/test_ginspectfile_csvgz.R tests/testthat/test_gloadlog.R tests/testthat/test_greadaccfile.R tests/testthat/test_gweardec.R tests/testthat/test_identify_levels.R tests/testthat/test_imputeTimegaps.R tests/testthat/test_isISO8601.R tests/testthat/test_is_this_a_dst_night.R tests/testthat/test_lightPart5.R tests/testthat/test_load_check_params.R tests/testthat/test_part1_with_allmetrics.R tests/testthat/test_part3_1_night.R tests/testthat/test_part3_no4am.R tests/testthat/test_part5_analyseRest.R tests/testthat/test_part5_classifyNaps.R tests/testthat/test_part5_fixmissingnight.R tests/testthat/test_part5_handle_lux_extremes.R tests/testthat/test_part5_lux_persegment.R tests/testthat/test_part5_qwindow.R tests/testthat/test_part6.R tests/testthat/test_qwindowPart2.R tests/testthat/test_read.myacc.csv.R tests/testthat/test_recording.starts.at.midnight.R tests/testthat/test_recordingEndSleepHour.R tests/testthat/test_sibSadeh_sptHorAngle.R tests/testthat/test_sibreport.R tests/testthat/test_tidyup_df.R tests/testthat/test_updateBlocksize.R user-scripts/README.md user-scripts/agd2csv.R user-scripts/script_individualised_time_per_level.R user-scripts/verisense_count_steps.R
vignettes/.gitignore
vignettes/Cookbook.Rmd vignettes/CutPoints.Rmd vignettes/ExternalFunction.Rmd
vignettes/GGIR-MASTERLOGO-RGB.png
vignettes/GGIR.Rmd vignettes/GGIRParameters.Rmd vignettes/GGIRoutput.Rmd vignettes/HouseHoldCoanalysis.Rmd
vignettes/LICENSE_images
vignettes/TutorialDaySegmentAnalyses.Rmd vignettes/chapter0_Contributing.Rmd vignettes/chapter0_GetStarted.Rmd vignettes/chapter0_Installation.Rmd vignettes/chapter0_Support.Rmd vignettes/chapter10_SleepAnalysis.Rmd vignettes/chapter11_DescribingDataCutPoints.Rmd vignettes/chapter12_TimeUseAnalysis.Rmd vignettes/chapter13_CircadianRhythm.Rmd vignettes/chapter14_BehaviouralFragmentation.Rmd vignettes/chapter1_WhatIsGGIR.Rmd vignettes/chapter2_Pipeline.Rmd vignettes/chapter3_QualityAssessment.Rmd vignettes/chapter4_AccMetrics.Rmd vignettes/chapter5_StudyProtocol.Rmd vignettes/chapter6_DataImputation.Rmd vignettes/chapter7_DescribingDataWithoutKnowingSleep.Rmd vignettes/chapter8_SleepFundamentalsSibs.Rmd vignettes/chapter9_SleepFundamentalsGuiders.Rmd vignettes/chapterInProgress.Rmd
vignettes/example_dovisual.jpg
vignettes/nonwearimage.jpg
vignettes/readmyacccsv.Rmd
vignettes/reportexample.jpg
wadpac/GGIR documentation built on March 5, 2025, 11 p.m.